Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1029
         (810 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1046 - 9138000-9138293,9139550-9139714,9139862-9140010,914...    31   1.4  
12_02_0985 + 25052753-25053691                                         29   3.3  
11_02_0004 + 7260084-7260967,7261284-7263264,7263359-7263420,726...    29   4.4  
06_03_0021 + 15520342-15520443,15522217-15522867,15522980-155231...    29   4.4  
08_02_0980 + 23255992-23256408,23256480-23256517,23256606-232566...    28   7.6  
05_04_0213 + 19109369-19109581,19109803-19109873,19110175-191102...    28   7.6  

>07_01_1046 -
           9138000-9138293,9139550-9139714,9139862-9140010,
           9140363-9140510,9140659-9140727,9140827-9141087,
           9141498-9141692,9142932-9143048,9143701-9144477
          Length = 724

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +3

Query: 417 MGVAQIMLDDINLSNIVIGWYKLFGTTSL*RKLNYVLQLEHNFGVLRRNNIYK 575
           +GVA + +++I   + V GW+ + G  S   K +  L L   +  + +N +YK
Sbjct: 124 IGVASVPVENITPGDTVSGWFPISGQYSNPMKASPELHLSIQYKPIEQNPLYK 176


>12_02_0985 + 25052753-25053691
          Length = 312

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +2

Query: 74  PGSRTAGRETITRGDYAWRCPTFNVLPKRILRGGSHTCSRLTSQARK 214
           PG    G  T T   Y++    FN      +     +CSR  S+AR+
Sbjct: 72  PGGGGGGNATTTTSSYSYTASNFNASRSTFVVALPPSCSRTVSEARR 118


>11_02_0004 +
           7260084-7260967,7261284-7263264,7263359-7263420,
           7263614-7263686
          Length = 999

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 173 GSHTCSRLTSQARKPNPSSAIRQGLSRERKAMYSQSKD 286
           G + CS   S +++PN +S +R  LS+ +++   Q  D
Sbjct: 227 GEYKCSAFLSVSQRPNMNSLLRDMLSKFQRSSRDQDSD 264


>06_03_0021 +
           15520342-15520443,15522217-15522867,15522980-15523186,
           15523698-15523913,15523992-15524214,15525052-15525299,
           15525385-15525563,15525803-15526056,15526237-15526388
          Length = 743

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 457 ERFMSSSIIWATPINTFFPSMRP*SPQTVTCSTHPLK 347
           +R   SSIIW +P++  FP  RP + Q      H LK
Sbjct: 446 QRTSDSSIIWRSPVD--FPDARPETLQKTKSVLHKLK 480


>08_02_0980 +
           23255992-23256408,23256480-23256517,23256606-23256654,
           23256787-23256848,23256876-23256938,23256939-23257599
          Length = 429

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 229 AGRVRLPCLACKPRARMTSTSKNP 158
           +GRVR PCL  +PR+   S+S  P
Sbjct: 288 SGRVRRPCLNMRPRSPRRSSSPAP 311


>05_04_0213 +
           19109369-19109581,19109803-19109873,19110175-19110229,
           19110441-19110626
          Length = 174

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 194 LTSQARKPNPSSAIRQGLSRERKAMYSQ-SKDNNRTTYARPSLPANAN 334
           L S +   NPS+ +R  L  E +      ++ N+R+ Y  P LP+N N
Sbjct: 25  LFSSSPHLNPSTLLRGLLETEAQLFVPVGTRSNHRSPYENPPLPSNHN 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,310,460
Number of Sequences: 37544
Number of extensions: 412427
Number of successful extensions: 962
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)