Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1029
(810 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated p... 140 1e-33
AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interact... 140 1e-33
U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical pr... 54 2e-07
AC024869-3|AAK68605.2| 452|Caenorhabditis elegans Synaptotagmin... 37 0.015
U00051-15|AAZ91344.1| 270|Caenorhabditis elegans Synaptotagmin ... 36 0.045
U55856-5|AAA98023.1| 441|Caenorhabditis elegans Synaptotagmin p... 35 0.079
L15302-1|AAA28145.1| 441|Caenorhabditis elegans synaptotagmin I... 35 0.079
AJ303369-1|CAC33880.1| 153|Caenorhabditis elegans synaptotagmin... 35 0.079
U41263-6|AAC24432.1| 338|Caenorhabditis elegans Serpentine rece... 29 5.2
AF000196-4|AAC24254.2| 429|Caenorhabditis elegans Hypothetical ... 28 9.1
>U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated
protein 10, isoform a protein.
Length = 1563
Score = 140 bits (339), Expect = 1e-33
Identities = 69/148 (46%), Positives = 99/148 (66%), Gaps = 1/148 (0%)
Frame = +3
Query: 63 FIDGLGPGQLVGRQLLGATTLGDVQLSMCYQKGFLEVEVIRARGLQARQGSRTLPAPYVK 242
F+D LGPGQ+VGRQ+L + LG++Q+++ + ++VE+I+A+ L + G + PAPYVK
Sbjct: 1398 FVDNLGPGQVVGRQVLASPVLGEIQIALMAGRSGIDVEIIKAKNLVVKPGVKVCPAPYVK 1457
Query: 243 VYLVSGXXXXXXXXXXXXXXXLDPLYQQTLTFRENFKGCVLQVTVWGDYGRIEGKKVFMG 422
VYL+ G PL+QQ L F ++ K LQVTV GDYGR+E +KVFMG
Sbjct: 1458 VYLMEGKQCIAKAKTNAATKTTSPLFQQHLIFNDSPKKKTLQVTVLGDYGRME-RKVFMG 1516
Query: 423 VAQIMLDDINL-SNIVIGWYKLFGTTSL 503
++QI L+D+ L S +IGWYKLF ++SL
Sbjct: 1517 ISQIRLEDLELGSQPLIGWYKLFHSSSL 1544
>AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interacting
molecule UNC-10 protein.
Length = 1563
Score = 140 bits (339), Expect = 1e-33
Identities = 69/148 (46%), Positives = 99/148 (66%), Gaps = 1/148 (0%)
Frame = +3
Query: 63 FIDGLGPGQLVGRQLLGATTLGDVQLSMCYQKGFLEVEVIRARGLQARQGSRTLPAPYVK 242
F+D LGPGQ+VGRQ+L + LG++Q+++ + ++VE+I+A+ L + G + PAPYVK
Sbjct: 1398 FVDNLGPGQVVGRQVLASPVLGEIQIALMAGRSGIDVEIIKAKNLVVKPGVKVCPAPYVK 1457
Query: 243 VYLVSGXXXXXXXXXXXXXXXLDPLYQQTLTFRENFKGCVLQVTVWGDYGRIEGKKVFMG 422
VYL+ G PL+QQ L F ++ K LQVTV GDYGR+E +KVFMG
Sbjct: 1458 VYLMEGKQCIAKAKTNAATKTTSPLFQQHLIFNDSPKKKTLQVTVLGDYGRME-RKVFMG 1516
Query: 423 VAQIMLDDINL-SNIVIGWYKLFGTTSL 503
++QI L+D+ L S +IGWYKLF ++SL
Sbjct: 1517 ISQIRLEDLELGSQPLIGWYKLFHSSSL 1544
>U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical protein
F45E4.3a protein.
Length = 1231
Score = 53.6 bits (123), Expect = 2e-07
Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 5/148 (3%)
Frame = +3
Query: 66 IDGLGPGQLVGRQLLGATTL-GDVQLSMCYQ-KGFLEVEVIRARGLQARQGSRTLPAPYV 239
I+G+ ++ L ++ G +Q+S+ Y L ++IRARGL++R SR+ P P+V
Sbjct: 1004 INGINNNSVLHHHTLSDSSCHGHIQVSLGYDGNSRLVAKIIRARGLKSRDQSRSAPNPFV 1063
Query: 240 KVYLVSGXXXXXXXXXXXXXXXLDPLYQQTLTFR---ENFKGCVLQVTVWGDYGRIEGKK 410
KVYL+ G P + Q L ++ L+ TV DY R +
Sbjct: 1064 KVYLLPGRKVSHKRRTRFVDSSCAPEWNQVLEYQVAPHTLNTMFLEFTVC-DYQR-DVDD 1121
Query: 411 VFMGVAQIMLDDINLSNIVIGWYKLFGT 494
+ +G QI L D + N WY L G+
Sbjct: 1122 LPLGNVQIPLADKSAINTGPRWYPLQGS 1149
>AC024869-3|AAK68605.2| 452|Caenorhabditis elegans Synaptotagmin
protein 3 protein.
Length = 452
Score = 37.1 bits (82), Expect = 0.015
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Frame = +3
Query: 123 LGDVQLSMCY--QKGFLEVEVIRARGLQARQGSRTLPAPYVKVYLVSGXXXXXXXXXXXX 296
LG+V L++ Y K L V V+ + L+ + L PYVK+YL+ G
Sbjct: 144 LGEVCLALRYVPNKNKLSVVVMECKNLK-KMDVLGLSDPYVKIYLMMGTKRLEKKKTTIK 202
Query: 297 XXXLDPLYQQTLTF---RENFKGCVLQVTVWGDYGRI 398
L+P Y ++ +F E + L VTV DY R+
Sbjct: 203 MKTLNPYYNESFSFDVTSEKMQRVHLHVTV-SDYDRV 238
>U00051-15|AAZ91344.1| 270|Caenorhabditis elegans Synaptotagmin
protein 2 protein.
Length = 270
Score = 35.5 bits (78), Expect = 0.045
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 5/119 (4%)
Frame = +3
Query: 123 LGDVQLSMCYQK--GFLEVEVIRARGLQARQGSRTLPAPYVKVYLVSGXXXXXXXXXXXX 296
LGD+ S Y+ G + + ++ AR L+ + PYVK+YL G
Sbjct: 118 LGDICFSTRYRPATGTVTLTIMEARNLKKMDVGGSSD-PYVKIYLHHGRKLLSKKKTSRK 176
Query: 297 XXXLDPLYQQTLTFR---ENFKGCVLQVTVWGDYGRIEGKKVFMGVAQIMLDDINLSNI 464
L+P Y ++ F+ + L V+VW DY ++ K F+G + +NL I
Sbjct: 177 YKTLNPYYNESFQFKIEPHMIEKVHLIVSVW-DYDKM-SKNDFIGEVTLGSKHLNLPQI 233
>U55856-5|AAA98023.1| 441|Caenorhabditis elegans Synaptotagmin
protein 1, isoform a protein.
Length = 441
Score = 34.7 bits (76), Expect = 0.079
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Frame = +3
Query: 120 TLGDVQLSMCY--QKGFLEVEVIRARGLQARQGSRTLPAPYVKVYLVSGXXXXXXXXXXX 293
+LGD+ S+ Y G L V ++ A+ L+ + L PYVK+ L+ G
Sbjct: 292 SLGDICFSLRYVPTAGKLTVVILEAKNLK-KMDVGGLSDPYVKIVLMQGGKRLKKKKTSI 350
Query: 294 XXXXLDPLYQQTLTFR---ENFKGCVLQVTVWGDYGRI 398
L+P Y ++ +F E + L +TV DY ++
Sbjct: 351 KKCTLNPYYNESFSFEVPFEQIQKVSLMITVM-DYDKL 387
>L15302-1|AAA28145.1| 441|Caenorhabditis elegans synaptotagmin I
protein.
Length = 441
Score = 34.7 bits (76), Expect = 0.079
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Frame = +3
Query: 120 TLGDVQLSMCY--QKGFLEVEVIRARGLQARQGSRTLPAPYVKVYLVSGXXXXXXXXXXX 293
+LGD+ S+ Y G L V ++ A+ L+ + L PYVK+ L+ G
Sbjct: 292 SLGDICFSLRYVPTAGKLTVVILEAKNLK-KMDVGGLSDPYVKIVLMQGGKRLKKKKTSI 350
Query: 294 XXXXLDPLYQQTLTFR---ENFKGCVLQVTVWGDYGRI 398
L+P Y ++ +F E + L +TV DY ++
Sbjct: 351 KKCTLNPYYNESFSFEVPFEQIQKVSLMITVM-DYDKL 387
>AJ303369-1|CAC33880.1| 153|Caenorhabditis elegans synaptotagmin 1
protein.
Length = 153
Score = 34.7 bits (76), Expect = 0.079
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Frame = +3
Query: 120 TLGDVQLSMCY--QKGFLEVEVIRARGLQARQGSRTLPAPYVKVYLVSGXXXXXXXXXXX 293
+LGD+ S+ Y G L V ++ A+ L+ + L PYVK+ L+ G
Sbjct: 11 SLGDICFSLRYVPTAGKLTVVILEAKNLK-KMDVGGLSDPYVKIVLMQGGKRLKKKKTSI 69
Query: 294 XXXXLDPLYQQTLTFR---ENFKGCVLQVTVWGDYGRI 398
L+P Y ++ +F E + L +TV DY ++
Sbjct: 70 KKCTLNPYYNESFSFEVPFEQIQKVSLMITVM-DYDKL 106
>U41263-6|AAC24432.1| 338|Caenorhabditis elegans Serpentine
receptor, class a (alpha)protein 26 protein.
Length = 338
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/46 (26%), Positives = 28/46 (60%)
Frame = -2
Query: 641 IFKIYFAFYCD*SSTTKFYFGQFVDVISPQYPKIMLQLKNIIQLSL 504
+F++YF + + ST + F +I+ +PK+ ++ +N+I ++L
Sbjct: 109 VFELYFYYMTNYFSTYSVFSLTFDRLIACYFPKLYIKTENLITITL 154
>AF000196-4|AAC24254.2| 429|Caenorhabditis elegans Hypothetical
protein B0041.5 protein.
Length = 429
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 218 NPSSAIRQGLSRERKAMYSQSKDN 289
NPS++IR+GLS+ + + S S DN
Sbjct: 396 NPSTSIRKGLSKRVRKVESLSPDN 419
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,402,059
Number of Sequences: 27780
Number of extensions: 360966
Number of successful extensions: 808
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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