Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1029
         (810 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    24   1.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   4.4  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              23   4.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   7.7  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   7.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   7.7  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 4   YGGPRACEVLVLQKAEGYRTSLTAWV 81
           +G P A    VL+KAE ++  +  WV
Sbjct: 60  FGSPDAMFSQVLKKAENFKDVVKIWV 85


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 226 GRVRLPCLACKPRARMTSTSK 164
           G  ++ C+AC P  R T  S+
Sbjct: 383 GHWQMSCVACSPPPRQTPPSR 403


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 540 NFGVLRRNNIYKLSEIK 590
           NF +L +NN++K   IK
Sbjct: 69  NFNILDKNNVFKPQGIK 85


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +1

Query: 115 RLRLEMSNFQCATKKDS 165
           RLR  M N  CAT K S
Sbjct: 678 RLRNTMENLTCATVKGS 694


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 449 YVVQHYLGHAHKYFFP 402
           YV  HY  +  K+FFP
Sbjct: 128 YVQCHYKQNPEKFFFP 143


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +2

Query: 263 AMYSQSKDNNRTTYARPSLPANANVSRKLQRMCTAGYC 376
           A  S S  +N  + ++    + +++SR   R  ++GYC
Sbjct: 10  AKVSDSGYSNTCSNSQSQRSSGSSISRNSNRSESSGYC 47


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +2

Query: 263 AMYSQSKDNNRTTYARPSLPANANVSRKLQRMCTAGYC 376
           A  S S  +N  + ++    + +++SR   R  ++GYC
Sbjct: 10  AKVSDSGYSNTCSNSQSQRSSGSSISRNSNRSESSGYC 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,299
Number of Sequences: 438
Number of extensions: 4741
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)