Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1029
         (810 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11490.1 68418.m01341 adaptin family protein similar to SP|Q9...    28   6.4  
At4g30710.2 68417.m04353 expressed protein contains Pfam domain,...    28   6.4  
At4g30710.1 68417.m04352 expressed protein contains Pfam domain,...    28   6.4  
At5g16620.1 68418.m01946 hydroxyproline-rich glycoprotein family...    28   8.4  

>At5g11490.1 68418.m01341 adaptin family protein similar to
           SP|Q9WV76 Adapter-related protein complex 4 beta 1
           subunit (Beta subunit of AP- 4) {Mus musculus},
           beta-adaptin Drosophila 1 {Drosophila melanogaster}
           GI:434902; contains Pfam profile: PF01602 Adaptin N
           terminal region
          Length = 841

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = +2

Query: 284 DNNRTTYARPSLPANANVSRKLQRMCTAG 370
           +NN + Y  PSL +++N++ ++Q +  +G
Sbjct: 657 NNNGSAYTAPSLESSSNITSQMQELAISG 685


>At4g30710.2 68417.m04353 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 188 SRLTSQARKPNPSSAIR--QGLSRERKAMYSQSKDNNRTTYARPSLPANANVSRKLQRMC 361
           SR  S +R  +PS  +   +GLS  R    S S+  N + +ARPS P +  +S    R  
Sbjct: 343 SRGVSPSRGLSPSRGLSPTRGLSPSRGL--SPSRGTNTSCFARPSTPPSRGISPSRIRQT 400

Query: 362 T 364
           T
Sbjct: 401 T 401


>At4g30710.1 68417.m04352 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 188 SRLTSQARKPNPSSAIR--QGLSRERKAMYSQSKDNNRTTYARPSLPANANVSRKLQRMC 361
           SR  S +R  +PS  +   +GLS  R    S S+  N + +ARPS P +  +S    R  
Sbjct: 343 SRGVSPSRGLSPSRGLSPTRGLSPSRGL--SPSRGTNTSCFARPSTPPSRGISPSRIRQT 400

Query: 362 T 364
           T
Sbjct: 401 T 401


>At5g16620.1 68418.m01946 hydroxyproline-rich glycoprotein family
           protein contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 447

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 8/54 (14%)
 Frame = +2

Query: 185 CSRLTSQARKPNPSS--------AIRQGLSRERKAMYSQSKDNNRTTYARPSLP 322
           CS++++ A+  +PSS         + +  S+   +++S S+D   T+ A PS+P
Sbjct: 43  CSKISASAQSQSPSSRPENTGEIVVVKQRSKAFASIFSSSRDQQTTSVASPSVP 96


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,426,480
Number of Sequences: 28952
Number of extensions: 335819
Number of successful extensions: 775
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)