Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1028
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation facto...   111   7e-27
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        23   3.2  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    22   4.2  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   4.2  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   5.5  
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      22   5.5  
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    22   5.5  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   9.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   9.7  
AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    21   9.7  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    21   9.7  

>AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation factor
           1-alpha protein.
          Length = 56

 Score =  111 bits (266), Expect = 7e-27
 Identities = 52/56 (92%), Positives = 54/56 (96%)
 Frame = +2

Query: 401 LQDVYKIGGIGTVPVGRVETGILKPGMVVVFAPAAITTEVKSVEMHHEALQEAMPG 568
           LQDVYKIGGIGTVPVGRVETG+LKPGMVVVFAPA ITTEVKSVEMHHEAL EA+PG
Sbjct: 1   LQDVYKIGGIGTVPVGRVETGVLKPGMVVVFAPANITTEVKSVEMHHEALPEAVPG 56


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 455 ETGILKPGMVVVFAPAAITTEVKS 526
           ETG ++PG++    P   T EV++
Sbjct: 96  ETGSIRPGVIGGSKPRVATPEVEN 119


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 588 TLKPTLSPGIASCSASWCIS 529
           TL   +S GIASC  S+ I+
Sbjct: 175 TLSAAVSGGIASCKLSYDIA 194


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 5/17 (29%), Positives = 11/17 (64%)
 Frame = +3

Query: 231  YLAGTVTICWSLLIRCL 281
            +    + ICW++L+ C+
Sbjct: 1116 FFPSKIRICWNVLLNCV 1132


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = +2

Query: 620 GYVAGDSXNAPPKGAFRLYCSGDCAQP 700
           G V  +     P G    YC G+C  P
Sbjct: 281 GSVGWNDWIVAPLGYDAYYCGGECEYP 307


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 381 RSPFACLFRTCTR*EES 431
           ++P  C+ R CT  EES
Sbjct: 120 KAPLECMCRPCTGVEES 136


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 615 RSSFTDTFLTLKPTLSPGIASCSASWCIS 529
           +S+     L L   +S GIASC  S+ I+
Sbjct: 167 KSALNAKGLILSAAVSGGIASCKLSYDIA 195


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 333 HFPSTLPSLRSMVHPLNQGILSEGSSILSPC 241
           H P T P+   +V P ++    +  + L+PC
Sbjct: 103 HNPLTPPNSEPLVSPKSEKEEKDMETTLTPC 133


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +2

Query: 425  GIGTVPVGRVETGILKPGMVVVFAPAAITTEV 520
            G+G +P         KP   V  AP  +TT V
Sbjct: 990  GLGLIPDNPSREDCTKPPEPVTPAPPQVTTGV 1021


>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 615 RSSFTDTFLTLKPTLSPGIASCSASWCIS 529
           +S+     + L   +S GIASC  S+ I+
Sbjct: 167 KSALNAKGMILSAAVSGGIASCKLSYDIA 195


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/36 (25%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -1

Query: 169 FLNLF-IASLMVRRFGRVHFIHADNKLFYAKSESKQ 65
           F ++F I+ L++  +  +HF++  + LF+ + E  +
Sbjct: 196 FNDIFGISFLLIISYSTLHFVNYIDDLFFFRFEKSK 231


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,376
Number of Sequences: 336
Number of extensions: 3455
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)