Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1028
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 348 5e-97
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 348 5e-97
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 348 5e-97
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 120 2e-28
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 113 2e-26
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 93 3e-20
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 36 0.006
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 32 0.091
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 28 1.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.0
SPBC776.06c |||spindle pole body interacting protein |Schizosacc... 27 2.0
SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6 |Schizosacch... 27 2.6
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 2.6
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt... 26 4.5
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 26 4.5
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 26 4.5
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po... 26 6.0
SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit |Sc... 26 6.0
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 26 6.0
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 25 7.9
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 7.9
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 7.9
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 25 7.9
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 348 bits (855), Expect = 5e-97
Identities = 157/217 (72%), Positives = 189/217 (87%)
Frame = +2
Query: 11 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIK 190
TGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T + +AR+EEI KE S++IK
Sbjct: 120 TGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIK 177
Query: 191 KIGYNPATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDGKVEGKCLIEALDAIQPPS 370
K+G+NP TV FVP+SG+ GDNM+EP+ MPW++GW + K G V+GK L+EA+D+I+PP+
Sbjct: 178 KVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPA 237
Query: 371 RPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFAPAAITTEVKSVEMHHEAL 550
RPT+KPLRLPLQDVYKIGGIGTVPVGRVETG++KPGM+V FAPA +TTEVKSVEMHHE+L
Sbjct: 238 RPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESL 297
Query: 551 QEAMPGDNVGFNVKNVSVKELRRGYVAGDSXNAPPKG 661
+PGDNVGFNVKNVSVK++RRG V GDS N PP G
Sbjct: 298 DAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMG 334
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 348 bits (855), Expect = 5e-97
Identities = 157/217 (72%), Positives = 189/217 (87%)
Frame = +2
Query: 11 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIK 190
TGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T + +AR+EEI KE S++IK
Sbjct: 120 TGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIK 177
Query: 191 KIGYNPATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDGKVEGKCLIEALDAIQPPS 370
K+G+NP TV FVP+SG+ GDNM+EP+ MPW++GW + K G V+GK L+EA+D+I+PP+
Sbjct: 178 KVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPA 237
Query: 371 RPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFAPAAITTEVKSVEMHHEAL 550
RPT+KPLRLPLQDVYKIGGIGTVPVGRVETG++KPGM+V FAPA +TTEVKSVEMHHE+L
Sbjct: 238 RPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESL 297
Query: 551 QEAMPGDNVGFNVKNVSVKELRRGYVAGDSXNAPPKG 661
+PGDNVGFNVKNVSVK++RRG V GDS N PP G
Sbjct: 298 DAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMG 334
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 348 bits (855), Expect = 5e-97
Identities = 157/217 (72%), Positives = 189/217 (87%)
Frame = +2
Query: 11 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIK 190
TGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T + +AR+EEI KE S++IK
Sbjct: 120 TGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIK 177
Query: 191 KIGYNPATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDGKVEGKCLIEALDAIQPPS 370
K+G+NP TV FVP+SG+ GDNM+EP+ MPW++GW + K G V+GK L+EA+D+I+PP+
Sbjct: 178 KVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPA 237
Query: 371 RPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFAPAAITTEVKSVEMHHEAL 550
RPT+KPLRLPLQDVYKIGGIGTVPVGRVETG++KPGM+V FAPA +TTEVKSVEMHHE+L
Sbjct: 238 RPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESL 297
Query: 551 QEAMPGDNVGFNVKNVSVKELRRGYVAGDSXNAPPKG 661
+PGDNVGFNVKNVSVK++RRG V GDS N PP G
Sbjct: 298 DAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMG 334
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 120 bits (289), Expect = 2e-28
Identities = 78/213 (36%), Positives = 114/213 (53%), Gaps = 4/213 (1%)
Frame = +2
Query: 20 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSY-IKKI 196
FE G +NGQTREHA L LG+ +++V VNK+D + E R++EIK VS + IK +
Sbjct: 293 FERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS--WSEDRFQEIKNIVSDFLIKMV 350
Query: 197 GYNPATVAFVPISGWHGDNML--EPSDKMPWFKGWTIDRKDGKVEGKCLIEALDAIQPPS 370
G+ + V FVPIS G N++ + SD W+KG T L+ ALD + PP
Sbjct: 351 GFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPT------------LLSALDQLVPPE 398
Query: 371 RPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFAPAAITTEVKSVEMHHEAL 550
+P KPLRL + DVY+ TV GRVE G ++ V+ + VK+V + +
Sbjct: 399 KPYRKPLRLSIDDVYRSPRSVTV-TGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPS 457
Query: 551 QE-AMPGDNVGFNVKNVSVKELRRGYVAGDSXN 646
A+ GD V + ++ V +LR G + + N
Sbjct: 458 STWAVAGDTVTLQLADIEVNQLRPGDILSNYEN 490
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 113 bits (272), Expect = 2e-26
Identities = 70/216 (32%), Positives = 114/216 (52%), Gaps = 5/216 (2%)
Frame = +2
Query: 14 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIKK 193
GEFEAG + GQTREHA+LA T G+ L+V +NKMD + E RY+E ++S ++++
Sbjct: 352 GEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRR 411
Query: 194 I-GYNPAT-VAFVPISGWHGDNMLEPSDK--MPWFKGWTIDRKDGKVEGKCLIEALDAIQ 361
+ GYN T V ++P+S + G N+ + D PW+ +G L+E LD++
Sbjct: 412 VAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWY------------QGPSLLEYLDSMT 459
Query: 362 PPSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFAPAAITTEVKSV-EMH 538
R P +P+ YK +GT+ G++E G +K V+ P T EV ++ +
Sbjct: 460 HLERKVNAPFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEA 517
Query: 539 HEALQEAMPGDNVGFNVKNVSVKELRRGYVAGDSXN 646
E + ++ GD V V+ +++ GYV + N
Sbjct: 518 DEEISSSICGDQVRLRVRG-DDSDVQTGYVLTSTKN 552
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 93.5 bits (222), Expect = 3e-20
Identities = 68/212 (32%), Positives = 107/212 (50%), Gaps = 4/212 (1%)
Frame = +2
Query: 47 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIKKIGYNPATVAFV 226
QTREH LLA +GVKQ++V +NK+D EP E E+++ +S Y
Sbjct: 156 QTREHLLLARQVGVKQIVVYINKVDMVEPDMIELVEMEMRELLSEY-------------- 201
Query: 227 PISGWHGDNM-LEPSDKMPWFKGWTIDRKDGKVEGKCLIEALDA-IQPPSRPTEKPLRLP 400
G+ GDN + + +G + + G L+EA+D+ I P R T+ P +
Sbjct: 202 ---GFDGDNTPIVSGSALCALEGR--EPEIGLNSITKLMEAVDSYITLPERKTDVPFLMA 256
Query: 401 LQDVYKIGGIGTVPVGRVETGILKPG--MVVVFAPAAITTEVKSVEMHHEALQEAMPGDN 574
++DV+ I G GTV GRVE G LK G + +V + + T V +EM + L A+ GDN
Sbjct: 257 IEDVFSISGRGTVVTGRVERGTLKKGAEIEIVGYGSHLKTTVTGIEMFKKQLDAAVAGDN 316
Query: 575 VGFNVKNVSVKELRRGYVAGDSXNAPPKGAFR 670
G ++++ ++L+RG + P F+
Sbjct: 317 CGLLLRSIKREQLKRGMIVAQPGTVAPHQKFK 348
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 35.9 bits (79), Expect = 0.006
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Frame = +2
Query: 275 MPWFKGWTIDRKDGKVEGKCLIEALDAIQPPSRPTEKPLRLPLQDVYKIGGIGTVPVGRV 454
+P K + K GK + L E + I PP PLR L D + G + + R+
Sbjct: 206 IPMSKPILVSSKTGKNVEQILPEIIQKIPPPKGSENAPLRCLLIDSWYNSYQGVIGLVRI 265
Query: 455 ETGILKPGMVVVFAPAAITTEVKSVEMHHEALQEA--MPGDNVGF---NVKNV 598
G +K G V+ EV+ V + + + E + VG+ N+KN+
Sbjct: 266 MEGFIKKGGKVMSVNTGRKYEVQQVGIMYPDMTEVSRLRAGQVGYIIWNMKNI 318
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 31.9 bits (69), Expect = 0.091
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +2
Query: 80 LGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIKKIGYNPATVAFVPISGWHGDNML 259
L + + + KMD E + E ++ + + S++K+ F+PISG G N+
Sbjct: 407 LSISSYMFAITKMDEIE--WDENKFINLVNSIQSFLKESCGIIEKSKFIPISGLKGTNLT 464
Query: 260 EPSDK--MPWFKGWTI 301
S + W+K T+
Sbjct: 465 SISQEKLSQWYKSDTL 480
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 27.9 bits (59), Expect = 1.5
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = +2
Query: 167 KEVS---SYIKKIGYNPATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDGKVEGKCL 337
KEVS SYI +P T +G+ +N+++P P FKG ++ + K+ + L
Sbjct: 159 KEVSTSKSYISSGYLHPKTSPIFKKNGYATENVVDPISSSPRFKGPNYNKFNAKLYLESL 218
Query: 338 IEALDAIQPPS 370
E P S
Sbjct: 219 REKRRTYTPLS 229
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 2.0
Identities = 25/67 (37%), Positives = 34/67 (50%)
Frame = -2
Query: 621 PRRSSFTDTFLTLKPTLSPGIASCSASWCISTDLTSVVIAAGANTTTIPGLRIPVSTRPT 442
P +S TDT + PT S SC+ S I T +S + + T T+P P ST T
Sbjct: 209 PTSTSSTDTNSSPLPTTS---TSCTTSTSIPTGGSSSL--STPITPTVP----PTSTSST 259
Query: 441 GTVPIPP 421
++PIPP
Sbjct: 260 -SIPIPP 265
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = -2
Query: 576 TLSPGIASCSASWCISTDLTSVVIAAGANTTTIPGLRIPVSTRPTGTVPIP 424
T S I S +ST +T V ++T+IP S+ T + P+P
Sbjct: 173 TTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLP 223
Score = 26.2 bits (55), Expect = 4.5
Identities = 52/226 (23%), Positives = 89/226 (39%), Gaps = 5/226 (2%)
Frame = -2
Query: 672 SRKAPLGGAX-LESPAT*P-RRSSFTDTFLTLKPTLSPGIASCSASW-CISTDLT-SVVI 505
S P GG+ L +P T +S + T + + PT + + S+ ST T S I
Sbjct: 232 STSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSI 291
Query: 504 AAGANTTTIPGLRIPVSTRPTGTVPIPPILYTS*RGKRRGFSVGRDGGCIASSASMRHFP 325
N+TT +P ++ + + P PP TS S G + S+++
Sbjct: 292 PPTGNSTTPVTPTVPPTSTSSTSTP-PPPASTS--------STGTSSSPLPSTSTSCTTS 342
Query: 324 STLPSLRSMVHPLNQGILSEGSSILSPCQPDIGTNATVAGL*PIFLM*EDTSFLISS*RA 145
+++P + P+ + +S S P T++T P L+ TS S+
Sbjct: 343 TSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSP--LLSTSTSCTTST-SI 399
Query: 144 SW*GGSVESILFT-PTISCFTPRVKASRACSRVCPFLLIPASNSPV 10
G S + T P S TP + S P+ P +++P+
Sbjct: 400 PPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPL 445
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = -2
Query: 576 TLSPGIASCSASWCISTDLTSVVIAAGANTTTIPGLRIPVSTRPTGTVPIP 424
T S I S +ST +T V ++T+IP S+ T + P+P
Sbjct: 116 TTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLP 166
>SPBC776.06c |||spindle pole body interacting protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -1
Query: 157 FIASLMVRRFGRVHFIHADNKLFYAKSESKQGVFASLSILTDTGFE 20
F+A LM+ RVH D LF+ K VF+ S + D FE
Sbjct: 34 FLAELMLP--DRVHERREDWSLFFIHFSKKSNVFSLFSNVDDINFE 77
>SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = -1
Query: 523 LNFGGNS----CRSKYHNHTRLENSCLHSSNWHRSD-SSYLVHVLKRQAKGLL 380
+N GGNS C K +T +N C+ +WH + S +L+ +L G L
Sbjct: 1 MNHGGNSTMRHCSMKMTFNTDYDNLCIVFKSWHIGNLSQFLLSLLAIAILGYL 53
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.1 bits (57), Expect = 2.6
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = -2
Query: 588 TLKPTLSPGIASCSASWCISTDLTSVVIAAGANTTTIPGLRIPVSTRPTGTVPIPPILYT 409
T+ + + ASC S + + +SVV+ + T T+ VST TGTV +P YT
Sbjct: 65 TIAISQTDNAASCIPSASLLS--SSVVLYSAKETVTVSSYWSLVSTSVTGTVYVP---YT 119
Query: 408 S 406
S
Sbjct: 120 S 120
>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -1
Query: 157 FIASLMVRRFGRVHFIHAD-NKLFYA 83
F+ +L FGRVH + ++ N+L+YA
Sbjct: 203 FLQTLGTGSFGRVHLVQSNHNRLYYA 228
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -2
Query: 333 HFPSTLPSLRSMVHPLNQGILSEGSSILSPCQPDIGT 223
HFP T L + N + S SSIL PC P I +
Sbjct: 214 HFPFTQSPL-TKTKSFNDALTSS-SSILKPCMPSIAS 248
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 26.2 bits (55), Expect = 4.5
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = -2
Query: 504 AAGANTTTIPGLRIPVSTRPTGTVPIPPILYTS*RGKRRGFSVGRDGGCIASSAS 340
A G+NTT P I TGT P + GFS G+ G AS+A+
Sbjct: 236 APGSNTTVTPSSSI------TGTNDSKPAASNTGSAPTTGFSFGKPAGQAASTAT 284
>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 25.8 bits (54), Expect = 6.0
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +1
Query: 385 APSLASSGRVQDRRNRNGASWTSGDRNSQAWYGCGICSGSYY 510
+PS ASS R +R+GAS T+G R + A I +G Y+
Sbjct: 138 SPSGASSARQTPAPSRSGAS-TAGRRRTSATTRGAIQNGVYH 178
>SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 138
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 125 TEPPYHEARYEEIKKEVSSYIKK 193
+EPP + + YE+ KKE+ I+K
Sbjct: 9 SEPPVNVSYYEQCKKELHEMIEK 31
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 25.8 bits (54), Expect = 6.0
Identities = 7/30 (23%), Positives = 19/30 (63%)
Frame = +2
Query: 224 VPISGWHGDNMLEPSDKMPWFKGWTIDRKD 313
+P+ + G ++ P+D++ + K W +D+ +
Sbjct: 445 LPVRMFSGPHLANPNDELVYEKDWKLDKSE 474
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +2
Query: 47 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYI 187
QT EH + +K +I+ NK+D E Y+ I K + +
Sbjct: 149 QTSEHLAAIEIMQLKHIIILQNKVDLIRESAAEEHYQSILKFIKGTV 195
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.4 bits (53), Expect = 7.9
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = -2
Query: 612 SSFTDTFLTLKPTLSPGIASCSASWCISTDLTSVVIAAGANTTTIPGLRIPVSTRPTGTV 433
SS T+T + SP ++S S LTSV I + + T + I ST + T+
Sbjct: 194 SSSTNTVILTTSVNSPAVSS-------SETLTSVSITSTESAYTSSSVDIAASTTASSTL 246
Query: 432 PI 427
P+
Sbjct: 247 PV 248
>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 541
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 318 KSRENVSSRRSMRYSLRHGRLRSPFACLFRTCT 416
K+R + R+M++ H R R+P + +++ CT
Sbjct: 288 KARYLRNKTRNMKWHTIHERQRNPRSAIYQACT 320
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 345 ASMRHFPSTLPSLRSMVHPLNQGILSEGS 259
AS F L ++VHP+ Q + SEG+
Sbjct: 617 ASKEEFEDQRQKLDAVVHPITQKLYSEGA 645
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,810,836
Number of Sequences: 5004
Number of extensions: 59707
Number of successful extensions: 263
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -