Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1028
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 207 8e-54
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 86 3e-17
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 60 1e-09
SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068) 35 0.055
SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066) 33 0.17
SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.68
SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13) 31 1.2
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_59169| Best HMM Match : Sre (HMM E-Value=3.3) 29 3.6
SB_30560| Best HMM Match : Herpes_UL73 (HMM E-Value=4.5) 29 4.8
SB_56973| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_22474| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_21621| Best HMM Match : FKBP_N (HMM E-Value=7.3) 28 8.4
SB_14471| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 207 bits (505), Expect = 8e-54
Identities = 98/142 (69%), Positives = 113/142 (79%), Gaps = 6/142 (4%)
Frame = +2
Query: 251 NMLEPSDKMPWFKGWTIDR------KDGKVEGKCLIEALDAIQPPSRPTEKPLRLPLQDV 412
NM+ + +MPWFK WTI+R K+ G L E LD+I PPSRP+ PLRLPLQDV
Sbjct: 53 NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLPLRLPLQDV 112
Query: 413 YKIGGIGTVPVGRVETGILKPGMVVVFAPAAITTEVKSVEMHHEALQEAMPGDNVGFNVK 592
YKIGGIGTVPVGRVETG+LKPG VV F+P+ ITTEVKSVEMHHE+L EA+PGDNVGFNVK
Sbjct: 113 YKIGGIGTVPVGRVETGVLKPGTVVTFSPSNITTEVKSVEMHHESLAEALPGDNVGFNVK 172
Query: 593 NVSVKELRRGYVAGDSXNAPPK 658
NVSVK+++RG VAGD N PPK
Sbjct: 173 NVSVKDIKRGNVAGDFKNNPPK 194
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 85.8 bits (203), Expect = 3e-17
Identities = 37/67 (55%), Positives = 50/67 (74%)
Frame = +2
Query: 14 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIKK 193
GEFE G + GQTREHA+LA T GVK L++ VNKMD ++E RYEEIK +++ ++KK
Sbjct: 258 GEFETGFERGGQTREHAMLAKTAGVKHLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKK 317
Query: 194 IGYNPAT 214
+G+NP T
Sbjct: 318 VGFNPKT 324
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/47 (57%), Positives = 32/47 (68%)
Frame = +2
Query: 11 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEAR 151
TGEFEAG GQTREHA+L +LGV QLIV +NK+D YH +
Sbjct: 48 TGEFEAGFESGGQTREHAILVRSLGVTQLIVAINKLDMVVLGYHRGK 94
>SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068)
Length = 173
Score = 35.1 bits (77), Expect = 0.055
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = +2
Query: 365 PSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFAPAAITTEVKSVEMHHE 544
P R T L + + I G GT+ G + +G + V +T +VKS++M +
Sbjct: 104 PERTTSGSLLFAVDHCFSIRGQGTIMTGTILSGSVCVNDTVEIPSLKVTKKVKSMQMFKK 163
Query: 545 ALQEAMPGD 571
+ +A GD
Sbjct: 164 PVDKASQGD 172
>SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)
Length = 177
Score = 33.5 bits (73), Expect = 0.17
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Frame = +2
Query: 380 EKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFAPAAI----TTEVKSVEMHHEA 547
E+P + D Y + G+GTV G GI++ ++ P + ++S+
Sbjct: 102 EEPSEFQIDDTYSVPGVGTVISGTCMKGIIRLNDTLLLGPDPLGQFQPVAIRSIHRKRMP 161
Query: 548 LQEAMPGDNVGFNVK 592
++E G F++K
Sbjct: 162 VKEVRGGQTASFSLK 176
>SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1128
Score = 31.5 bits (68), Expect = 0.68
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +3
Query: 234 LAGTVTICWSLLIRCLGSRGGPSIARTAKSRENVSSRRSMRYSLRHGRLRSPFACLF 404
L +T CWS + C+ GPS KS EN R + +G ++ C F
Sbjct: 263 LLSFITSCWSYSVICMSCAVGPSCNPVEKSCENGEGRCVTAWGTVNGVMQYYRGCAF 319
>SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)
Length = 3035
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +2
Query: 137 YHEARYEEIKKEVSSYIKKIGY--NPATVAFVPISGWHGDNMLEPSDKMP 280
YHEAR EI ++S ++GY NPAT F+ H D E SD +P
Sbjct: 694 YHEARDCEILTDISRIAGRVGYSANPATNCFI-----H-DECSECSDTLP 737
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 98 IVGVNKMDSTEPPYHEARYEEIKKEVSSYIKKIGYNPAT-VAFVPISGWHGDNMLE 262
IV ++ ++ EA+ + K +S+ K +P+ + FVP WHG+ M+E
Sbjct: 1058 IVALSTRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113
>SB_59169| Best HMM Match : Sre (HMM E-Value=3.3)
Length = 447
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 531 STDLTSVVIAAGANTTTIPGLRIPVSTRPTGTVPIPPILYTS 406
+TD+TS+ I +TT I + + ++T T I I+ TS
Sbjct: 22 TTDITSITIITTTSTTDITSITMIITTSTTDITSITMIITTS 63
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -2
Query: 531 STDLTSVVIAAGANTTTIPGLRIPVSTRPTGTVPIPPILYTS 406
+TD+TS+ + +TT I + + ++T T + I I+ T+
Sbjct: 234 TTDITSITMIITTSTTDITSITMIITTTTTDDISITMIIITT 275
>SB_30560| Best HMM Match : Herpes_UL73 (HMM E-Value=4.5)
Length = 87
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 522 LTSVVIAAGANTTTIPGLRIPVSTRPTGTVPIPP 421
+T++ I TT+P +P S P+ + P PP
Sbjct: 23 ITTITITTITTNTTLPSTSLPPSPSPSPSPPSPP 56
>SB_56973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -3
Query: 317 CRPCDRWSTP*TKASYQKAPAYCHRASQISVRTP 216
C PC++ K P+ CHR + + V TP
Sbjct: 298 CPPCEQTCGRTLNCKNHKCPSQCHRGTHLIVITP 331
>SB_22474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 676 VKSESAFGWCVXRIASNVAATQFFHRYVLDVEAD 575
+K E AF WC+ I ++ +F R +L +AD
Sbjct: 451 LKEEEAF-WCLVAIVEHIMPKDYFSRTLLAAQAD 483
>SB_21621| Best HMM Match : FKBP_N (HMM E-Value=7.3)
Length = 272
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +2
Query: 470 KPGMVVVFAPAAITTEVKSVEMHHEALQ-EAMPGDNVGFNVKNVSVKELRRGYVAGDSXN 646
K + V A TT + + A+Q E PG ++G + KEL+ AG +
Sbjct: 86 KKAVPVASEDAIATTSITGSHLAMTAMQSEEEPGASMGHKTERKKAKELKEMKKAGLTLR 145
Query: 647 APP 655
PP
Sbjct: 146 PPP 148
>SB_14471| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 327
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +2
Query: 101 VGVNKMDSTEPPYHEARYEEIKKEVSSYIKKIGYNPATVAFVPISGWHGDNMLEP 265
+ +++ + E P H + K+ VS+ + + TV F+P GW EP
Sbjct: 117 ISLDRYLAIETPLHYRAFTT-KRRVSAIVAFVWVFSTTVGFIPYMGWRKVRRPEP 170
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,149,199
Number of Sequences: 59808
Number of extensions: 478290
Number of successful extensions: 1545
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1544
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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