Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1028
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 358 2e-99
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 358 2e-99
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 305 2e-83
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 117 9e-27
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 105 3e-23
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 105 3e-23
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 69 4e-12
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 69 4e-12
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 69 4e-12
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 60 1e-09
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 60 1e-09
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 60 1e-09
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 42 3e-04
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 42 6e-04
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 34 0.11
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 33 0.26
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr... 30 1.4
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ... 30 1.4
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z79752-5|CAB02082.3| 1119|Caenorhabditis elegans Hypothetical pr... 29 2.4
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 29 2.4
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 2.4
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 2.4
Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical p... 29 3.2
U55365-5|AAN84867.2| 350|Caenorhabditis elegans Serpentine rece... 29 3.2
Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z80214-3|CAB02265.1| 249|Caenorhabditis elegans Hypothetical pr... 29 4.2
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 28 5.6
U29515-1|AAC06328.1| 449|Caenorhabditis elegans fem-2 protein. 28 5.6
U28412-8|AAC46598.1| 449|Caenorhabditis elegans Feminization of... 28 5.6
Z81044-6|CAB02806.1| 360|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z70213-6|CAA94176.1| 167|Caenorhabditis elegans Hypothetical pr... 28 7.4
U67954-1|AAB52605.2| 826|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z99942-3|CAB17071.2| 585|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical pr... 27 9.8
AL033508-3|CAA22054.1| 315|Caenorhabditis elegans Hypothetical ... 27 9.8
AF068710-1|AAC17772.1| 419|Caenorhabditis elegans Hypothetical ... 27 9.8
AC006712-7|AAK39318.2| 264|Caenorhabditis elegans Hypothetical ... 27 9.8
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 358 bits (881), Expect = 2e-99
Identities = 167/218 (76%), Positives = 185/218 (84%)
Frame = +2
Query: 11 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIK 190
TGEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+ EAR+ EI EVS +IK
Sbjct: 120 TGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIK 179
Query: 191 KIGYNPATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDGKVEGKCLIEALDAIQPPS 370
KIGYNP V FVPISG++GDNMLE S MPWFKGW ++RK+G GK L+EALD+I PP
Sbjct: 180 KIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQ 239
Query: 371 RPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFAPAAITTEVKSVEMHHEAL 550
RPT++PLRLPLQDVYKIGGIGTVPVGRVETGI+KPGMVV FAP +TTEVKSVEMHHE+L
Sbjct: 240 RPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESL 299
Query: 551 QEAMPGDNVGFNVKNVSVKELRRGYVAGDSXNAPPKGA 664
EA+PGDNVGFNVKNVSVK++RRG V DS P K A
Sbjct: 300 PEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEA 337
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 358 bits (881), Expect = 2e-99
Identities = 167/218 (76%), Positives = 185/218 (84%)
Frame = +2
Query: 11 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIK 190
TGEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+ EAR+ EI EVS +IK
Sbjct: 120 TGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIK 179
Query: 191 KIGYNPATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDGKVEGKCLIEALDAIQPPS 370
KIGYNP V FVPISG++GDNMLE S MPWFKGW ++RK+G GK L+EALD+I PP
Sbjct: 180 KIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQ 239
Query: 371 RPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFAPAAITTEVKSVEMHHEAL 550
RPT++PLRLPLQDVYKIGGIGTVPVGRVETGI+KPGMVV FAP +TTEVKSVEMHHE+L
Sbjct: 240 RPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESL 299
Query: 551 QEAMPGDNVGFNVKNVSVKELRRGYVAGDSXNAPPKGA 664
EA+PGDNVGFNVKNVSVK++RRG V DS P K A
Sbjct: 300 PEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEA 337
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 305 bits (748), Expect = 2e-83
Identities = 139/190 (73%), Positives = 158/190 (83%)
Frame = +2
Query: 95 LIVGVNKMDSTEPPYHEARYEEIKKEVSSYIKKIGYNPATVAFVPISGWHGDNMLEPSDK 274
L+V NKMDSTEPP+ EAR+ EI EVS +IKKIGYNP V FVPISG++GDNMLE S
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSN 173
Query: 275 MPWFKGWTIDRKDGKVEGKCLIEALDAIQPPSRPTEKPLRLPLQDVYKIGGIGTVPVGRV 454
MPWFKGW ++RK+G GK L+EALD+I PP RPT++PLRLPLQDVYKIGGIGTVPVGRV
Sbjct: 174 MPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRV 233
Query: 455 ETGILKPGMVVVFAPAAITTEVKSVEMHHEALQEAMPGDNVGFNVKNVSVKELRRGYVAG 634
ETGI+KPGMVV FAP +TTEVKSVEMHHE+L EA+PGDNVGFNVKNVSVK++RRG V
Sbjct: 234 ETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCS 293
Query: 635 DSXNAPPKGA 664
DS P K A
Sbjct: 294 DSKQDPAKEA 303
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 117 bits (281), Expect = 9e-27
Identities = 65/207 (31%), Positives = 109/207 (52%), Gaps = 2/207 (0%)
Frame = +2
Query: 14 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIKK 193
GEFE G + GQTREH++L T GVK L++ VNKMD + E R++EI+ +++ +++K
Sbjct: 223 GEFETGFDRGGQTREHSMLVKTAGVKHLVILVNKMDDPTVKWEEERFKEIEGKLTPFLRK 282
Query: 194 IGYNPAT-VAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDGKVEGKCLIEALDAIQPP- 367
+G+NP T + +VP SG G + K + G C IE +D + P
Sbjct: 283 LGFNPKTDITYVPCSGLTG----------AFIKDRPTGSEGNWYSGPCFIEFIDVLLPSY 332
Query: 368 SRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFAPAAITTEVKSVEMHHEA 547
R P+R + + Y +GTV +G++E+G ++ G +V P +V +
Sbjct: 333 KRDFNGPVRCTVAEKY--SEMGTVIIGKMESGCVQKGDTLVVMPNKQPVQVLQIWADDVE 390
Query: 548 LQEAMPGDNVGFNVKNVSVKELRRGYV 628
+ + GDN+ F +K + EL+ G++
Sbjct: 391 TERVVAGDNIKFKLKGIEENELQGGFI 417
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 105 bits (252), Expect = 3e-23
Identities = 61/190 (32%), Positives = 106/190 (55%), Gaps = 1/190 (0%)
Frame = +2
Query: 11 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYI- 187
TGEFE G GQT+EHALL +LGV QLIV VNK+D+ + + + R++EIK +S ++
Sbjct: 283 TGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVFLT 340
Query: 188 KKIGYNPATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDGKVEGKCLIEALDAIQPP 367
++ G++ FVP+SG+ G+N+++ + + W+ +G CL+E +D+ P
Sbjct: 341 RQAGFSKP--KFVPVSGFTGENLIKRME-LDWY------------DGPCLLELIDSFVAP 385
Query: 368 SRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFAPAAITTEVKSVEMHHEA 547
P++ PLR+ + DV K+ V G++E+G ++ V + VK +++
Sbjct: 386 QPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDDKVYIMSSVTAATVKEC-ANNDG 444
Query: 548 LQEAMPGDNV 577
+ GD +
Sbjct: 445 SRHCFAGDYI 454
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 105 bits (252), Expect = 3e-23
Identities = 61/190 (32%), Positives = 106/190 (55%), Gaps = 1/190 (0%)
Frame = +2
Query: 11 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYI- 187
TGEFE G GQT+EHALL +LGV QLIV VNK+D+ + + + R++EIK +S ++
Sbjct: 301 TGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVFLT 358
Query: 188 KKIGYNPATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDGKVEGKCLIEALDAIQPP 367
++ G++ FVP+SG+ G+N+++ + + W+ +G CL+E +D+ P
Sbjct: 359 RQAGFSKP--KFVPVSGFTGENLIKRME-LDWY------------DGPCLLELIDSFVAP 403
Query: 368 SRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFAPAAITTEVKSVEMHHEA 547
P++ PLR+ + DV K+ V G++E+G ++ V + VK +++
Sbjct: 404 QPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDDKVYIMSSVTAATVKEC-ANNDG 462
Query: 548 LQEAMPGDNV 577
+ GD +
Sbjct: 463 SRHCFAGDYI 472
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 68.5 bits (160), Expect = 4e-12
Identities = 64/203 (31%), Positives = 98/203 (48%), Gaps = 9/203 (4%)
Frame = +2
Query: 47 QTREHALLAFTLGVK--QLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIKKIGYNPATVA 220
QTREH LLA +GV ++V +NK+D E P E R E ++ ++ + + GY T
Sbjct: 152 QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFGYPGDTCP 208
Query: 221 FVPISGWHGDNMLEPSDKMPWFKGWTIDRKDGKVEGKCLIEALDA--IQPPSRPTEKPLR 394
+ G + K P + G+ K L+E LD + P + E+P+
Sbjct: 209 VI-----FGSALCALEGKQP---------EIGEEAVKQLLEVLDNKFVIPERKVNEEPM- 253
Query: 395 LPLQDVYKIGGIGTVPVGRVETGILKPG-MVVVFAPAAITTEVKSV----EMHHEALQEA 559
+ VY I G GTV G++E GILK G + + T VKSV E + + +A
Sbjct: 254 FAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQA 313
Query: 560 MPGDNVGFNVKNVSVKELRRGYV 628
PGD +G ++ + K++RRG V
Sbjct: 314 EPGDQLGVLLRGLGPKDVRRGCV 336
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 68.5 bits (160), Expect = 4e-12
Identities = 64/203 (31%), Positives = 98/203 (48%), Gaps = 9/203 (4%)
Frame = +2
Query: 47 QTREHALLAFTLGVK--QLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIKKIGYNPATVA 220
QTREH LLA +GV ++V +NK+D E P E R E ++ ++ + + GY T
Sbjct: 153 QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFGYPGDTCP 209
Query: 221 FVPISGWHGDNMLEPSDKMPWFKGWTIDRKDGKVEGKCLIEALDA--IQPPSRPTEKPLR 394
+ G + K P + G+ K L+E LD + P + E+P+
Sbjct: 210 VI-----FGSALCALEGKQP---------EIGEEAVKQLLEVLDNKFVIPERKVNEEPM- 254
Query: 395 LPLQDVYKIGGIGTVPVGRVETGILKPG-MVVVFAPAAITTEVKSV----EMHHEALQEA 559
+ VY I G GTV G++E GILK G + + T VKSV E + + +A
Sbjct: 255 FAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQA 314
Query: 560 MPGDNVGFNVKNVSVKELRRGYV 628
PGD +G ++ + K++RRG V
Sbjct: 315 EPGDQLGVLLRGLGPKDVRRGCV 337
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 68.5 bits (160), Expect = 4e-12
Identities = 64/203 (31%), Positives = 98/203 (48%), Gaps = 9/203 (4%)
Frame = +2
Query: 47 QTREHALLAFTLGVK--QLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIKKIGYNPATVA 220
QTREH LLA +GV ++V +NK+D E P E R E ++ ++ + + GY T
Sbjct: 153 QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFGYPGDTCP 209
Query: 221 FVPISGWHGDNMLEPSDKMPWFKGWTIDRKDGKVEGKCLIEALDA--IQPPSRPTEKPLR 394
+ G + K P + G+ K L+E LD + P + E+P+
Sbjct: 210 VI-----FGSALCALEGKQP---------EIGEEAVKQLLEVLDNKFVIPERKVNEEPM- 254
Query: 395 LPLQDVYKIGGIGTVPVGRVETGILKPG-MVVVFAPAAITTEVKSV----EMHHEALQEA 559
+ VY I G GTV G++E GILK G + + T VKSV E + + +A
Sbjct: 255 FAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQA 314
Query: 560 MPGDNVGFNVKNVSVKELRRGYV 628
PGD +G ++ + K++RRG V
Sbjct: 315 EPGDQLGVLLRGLGPKDVRRGCV 337
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 60.5 bits (140), Expect = 1e-09
Identities = 53/201 (26%), Positives = 89/201 (44%), Gaps = 5/201 (2%)
Frame = +2
Query: 47 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIKKIGYNPATVAFV 226
QT+EH +LA +GVK + + +NK D E E + ++ E + G+N
Sbjct: 148 QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDLVEMEARELLSLHGFN------- 196
Query: 227 PISGWHGDNMLEPSDKMPWFKGWTIDRKDGKVEGKC---LIEALDAIQPPSRPTEKPLRL 397
D P +G + +G+ + C LI+ALD++ P R + +
Sbjct: 197 -------------GDATPVIRGSALSALEGQ-DISCIERLIDALDSLPEPDRNEKDTFVM 242
Query: 398 PLQDVYKIGGIGTVPVGRVETGILKPGMVVVFA--PAAITTEVKSVEMHHEALQEAMPGD 571
P+ I G GTV VG +E G+LK G V + T +++ ++++E GD
Sbjct: 243 PIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAGD 302
Query: 572 NVGFNVKNVSVKELRRGYVAG 634
+ G + V ++RG AG
Sbjct: 303 HCGVLCRGVKGDTVKRGMWAG 323
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 60.5 bits (140), Expect = 1e-09
Identities = 53/201 (26%), Positives = 89/201 (44%), Gaps = 5/201 (2%)
Frame = +2
Query: 47 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIKKIGYNPATVAFV 226
QT+EH +LA +GVK + + +NK D E E + ++ E + G+N
Sbjct: 148 QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDLVEMEARELLSLHGFN------- 196
Query: 227 PISGWHGDNMLEPSDKMPWFKGWTIDRKDGKVEGKC---LIEALDAIQPPSRPTEKPLRL 397
D P +G + +G+ + C LI+ALD++ P R + +
Sbjct: 197 -------------GDATPVIRGSALSALEGQ-DISCIERLIDALDSLPEPDRNEKDTFVM 242
Query: 398 PLQDVYKIGGIGTVPVGRVETGILKPGMVVVFA--PAAITTEVKSVEMHHEALQEAMPGD 571
P+ I G GTV VG +E G+LK G V + T +++ ++++E GD
Sbjct: 243 PIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAGD 302
Query: 572 NVGFNVKNVSVKELRRGYVAG 634
+ G + V ++RG AG
Sbjct: 303 HCGVLCRGVKGDTVKRGMWAG 323
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 60.1 bits (139), Expect = 1e-09
Identities = 28/30 (93%), Positives = 29/30 (96%)
Frame = +2
Query: 11 TGEFEAGISKNGQTREHALLAFTLGVKQLI 100
TGEFEAGISKNGQTREHALLA TLGVKQL+
Sbjct: 120 TGEFEAGISKNGQTREHALLAQTLGVKQLV 149
Score = 33.1 bits (72), Expect = 0.20
Identities = 31/90 (34%), Positives = 35/90 (38%)
Frame = +3
Query: 201 TIPLLWRSYRYLAGTVTICWSLLIRCLGSRGGPSIARTAKSRENVSSRRSMRYSLRHGRL 380
TI L+ + T T C C GSR G AR E SSR S + +L
Sbjct: 166 TIQRLFHLSQSPDSTETTCLRSPRTCHGSRDGLLNARKETLPERPSSRLLTPSSHHNAQL 225
Query: 381 RSPFACLFRTCTR*EESERCQLDEWRQEFS 470
R CTR EE E Q D R E S
Sbjct: 226 TDHSVFHSRMCTRSEELEPSQSDVLRPESS 255
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 42.3 bits (95), Expect = 3e-04
Identities = 51/211 (24%), Positives = 89/211 (42%), Gaps = 8/211 (3%)
Frame = +2
Query: 44 GQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIKKIGYNPATVAF 223
G T+EH LA +L V +V V K+D E + I + V S KK+
Sbjct: 267 GTTKEHLSLALSLHVPVYLV-VTKIDMCPANILEETMKNITRLVRS-AKKL--------- 315
Query: 224 VPISGWHGDNMLEPSDKMPWFKGWTIDRKDGKVEGKCL--IEALDAIQPPSRPTEK--PL 391
PI + D+++ + P K I + VEG L + I P R + P
Sbjct: 316 -PILVRNMDDVVHAAVNFPSKKVCPIFQVSN-VEGTNLPLLRQFLNIVPLRRQLNENDPA 373
Query: 392 RLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFAPAA----ITTEVKSVEMHHEALQEA 559
+ D+Y + G+GT+ G + +G ++ +++ P + + +KS+ +
Sbjct: 374 HFQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRMPVGIV 433
Query: 560 MPGDNVGFNVKNVSVKELRRGYVAGDSXNAP 652
G + F +K + K++R+G V D P
Sbjct: 434 KCGQSASFALKKIPKKDVRKGMVLVDPKVKP 464
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 41.5 bits (93), Expect = 6e-04
Identities = 49/209 (23%), Positives = 89/209 (42%), Gaps = 6/209 (2%)
Frame = +2
Query: 44 GQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIKKIGYNPATVAF 223
G T+EH LA +L V +V V K+D P Y EE K ++ ++ P V
Sbjct: 268 GTTKEHLSLALSLHVPVYLV-VTKIDMC-PAYI---LEETMKNITRLVRSAKKLPILVRN 322
Query: 224 VPISGWHGDNMLEPSDKM-PWFKGWTIDRKDGKVEGKCLIEALDAIQPPSRPTEK-PLRL 397
+ N PS K+ P F+ + +G L + L+ + + E P
Sbjct: 323 MDDCVHAAVNF--PSKKVCPIFQ---VSNVEG-TNLPLLRQFLNMVPLRRQLNENDPAHF 376
Query: 398 PLQDVYKIGGIGTVPVGRVETGILKPGMVVVFAPAA----ITTEVKSVEMHHEALQEAMP 565
+ D+Y + G+GT+ G + +G ++ +++ P + + +KS+ +
Sbjct: 377 QIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRCLVGIVKC 436
Query: 566 GDNVGFNVKNVSVKELRRGYVAGDSXNAP 652
G + F +K + K++R+G V D P
Sbjct: 437 GQSASFALKKIPKKDVRQGMVLVDPKVKP 465
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 33.9 bits (74), Expect = 0.11
Identities = 44/181 (24%), Positives = 72/181 (39%)
Frame = +2
Query: 47 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIKKIGYNPATVAFV 226
QT EH LLA ++I+ +NK D E +++ E K+V +K +G + +
Sbjct: 112 QTAEHLLLASKFCPNRVIIVLNKCDLAE----KSKISESAKKVRKGLKSMGVDENS---- 163
Query: 227 PISGWHGDNMLEPSDKMPWFKGWTIDRKDGKVEGKCLIEALDAIQPPSRPTEKPLRLPLQ 406
PI +E S +FK + +E + I P R E + +
Sbjct: 164 PI--------VEMSLADGYFKEEMLQNLKLAIESR--------IFEPKRDEEGEFLIAID 207
Query: 407 DVYKIGGIGTVPVGRVETGILKPGMVVVFAPAAITTEVKSVEMHHEALQEAMPGDNVGFN 586
+ I G GTV G V G+L+ + F VK++E + + + G F
Sbjct: 208 HCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQRVGQVAAGARAAFL 267
Query: 587 V 589
V
Sbjct: 268 V 268
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 32.7 bits (71), Expect = 0.26
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Frame = +2
Query: 386 PLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFAPAAITT----EVKSVEMHHEALQ 553
P ++++Y + +G V G + G L G V+ P T V S+ +A+
Sbjct: 402 PAFFTIEELYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRSRQAVG 461
Query: 554 EAMPGDNVGFNVKNVSVKELRRGYVAGDSXNAPP 655
PG+ ++ LRRG V + + PP
Sbjct: 462 CVNPGEAASISLNLPDGVSLRRGMVLAEIDHQPP 495
>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 30.3 bits (65), Expect = 1.4
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = -2
Query: 612 SSFTDTFLTLKPTLSPGIASCSASWCISTDLTSVVIAAGANTTTIPGLRIPVSTRPT-GT 436
S+FT T T T +PG + +T S GA TT PG V+ PT G
Sbjct: 2017 SNFTTTTTTSTTTTTPGTGPTVTAAQTTTTTPST---PGAGTTGTPGTGPTVTAAPTNGI 2073
Query: 435 VPIPPILYTS*RGKRRG 385
PI+ T+ + RG
Sbjct: 2074 STTQPIITTTKGAEGRG 2090
>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 30.3 bits (65), Expect = 1.4
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = -2
Query: 612 SSFTDTFLTLKPTLSPGIASCSASWCISTDLTSVVIAAGANTTTIPGLRIPVSTRPT-GT 436
S+FT T T T +PG + +T S GA TT PG V+ PT G
Sbjct: 2017 SNFTTTTTTSTTTTTPGTGPTVTAAQTTTTTPST---PGAGTTGTPGTGPTVTAAPTNGI 2073
Query: 435 VPIPPILYTS*RGKRRG 385
PI+ T+ + RG
Sbjct: 2074 STTQPIITTTKGAEGRG 2090
>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 30.3 bits (65), Expect = 1.4
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = -2
Query: 612 SSFTDTFLTLKPTLSPGIASCSASWCISTDLTSVVIAAGANTTTIPGLRIPVSTRPT-GT 436
S+FT T T T +PG + +T S GA TT PG V+ PT G
Sbjct: 2017 SNFTTTTTTSTTTTTPGTGPTVTAAQTTTTTPST---PGAGTTGTPGTGPTVTAAPTNGI 2073
Query: 435 VPIPPILYTS*RGKRRG 385
PI+ T+ + RG
Sbjct: 2074 STTQPIITTTKGAEGRG 2090
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/75 (25%), Positives = 30/75 (40%)
Frame = +2
Query: 365 PSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFAPAAITTEVKSVEMHHE 544
P R E + + + I G GTV G V G+L+ + F VK++E +
Sbjct: 153 PKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQ 212
Query: 545 ALQEAMPGDNVGFNV 589
+ + G F V
Sbjct: 213 RVGQVAAGARAAFLV 227
>Z79752-5|CAB02082.3| 1119|Caenorhabditis elegans Hypothetical
protein D2005.5 protein.
Length = 1119
Score = 29.5 bits (63), Expect = 2.4
Identities = 40/173 (23%), Positives = 65/173 (37%), Gaps = 2/173 (1%)
Frame = +2
Query: 62 ALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIKKIGYNPATVAFVPISGW 241
A F G QL + + TE P E + E +E +KK + F+ I G+
Sbjct: 217 AFEVFNKGNHQLSTDLVEDLLTEGPAFELKIEN-GEEKKYAVKKWSLHKTLTMFLAIIGF 275
Query: 242 HGDNMLEPSDKMPWFKGWTIDRKDGKVEGKCLIEALDAIQPPSRPTEKPLRLPLQ-DVYK 418
++ E ++ W+ G+ ID + + LD P + R ++ + K
Sbjct: 276 KSNDKKEKNEHEEWYYGF-IDAMKNDPANRAALYFLDKNWPEELEEREKERDRIRLTLLK 334
Query: 419 IGGIGTVPVGR-VETGILKPGMVVVFAPAAITTEVKSVEMHHEALQEAMPGDN 574
VG V T I + P A+ TE+ E +Q A+ G N
Sbjct: 335 SQRTNEEAVGEDVCTTIRPQPKDSGYNPDAVVTELVLRTYQEELVQPALEGKN 387
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = -2
Query: 564 GIASCSASWCISTDLTSVVIAAGANTTTIPGLRIPVSTRPTGTVPIP 424
G C A+ C TS I A + I I STRP VP+P
Sbjct: 3858 GFLKCRATNCAGQVETSCEIVAADEISVISDSSITSSTRPHFVVPLP 3904
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = -2
Query: 564 GIASCSASWCISTDLTSVVIAAGANTTTIPGLRIPVSTRPTGTVPIP 424
G C A+ C TS I A + I I STRP VP+P
Sbjct: 3858 GFLKCRATNCAGQVETSCEIVAADEISVISDSSITSSTRPHFVVPLP 3904
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = -2
Query: 564 GIASCSASWCISTDLTSVVIAAGANTTTIPGLRIPVSTRPTGTVPIP 424
G C A+ C TS I A + I I STRP VP+P
Sbjct: 3858 GFLKCRATNCAGQVETSCEIVAADEISVISDSSITSSTRPHFVVPLP 3904
>Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical
protein F26D2.10 protein.
Length = 1213
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -1
Query: 532 LNRLNFGGNSCRSKYHNHTRLENSCLHSSNWHRSDSSYLVHVLKRQAKGLL 380
LN + R ++HN R S L + S+S + +L+R+ KG++
Sbjct: 459 LNFMTGSNEQLRDRFHNRNRAVYSVLDQLQVNASNSIIVKRILRRKYKGIV 509
>U55365-5|AAN84867.2| 350|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 11 protein.
Length = 350
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 155 EEIKKEVSSYIKKIGYNPATVAFVPISGWHGDNM 256
E+ K+ +S+ +KIG+N ATV P+ G M
Sbjct: 284 EKWKRHLSATWRKIGFNSATVQVAPLCDTFGSEM 317
>Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 381 SVGRDGGCIASSASMRHFPSTLPSLRSMVHP 289
S G +GG I+ ++F S LPS VHP
Sbjct: 600 SGGEEGGSISPDLGHKNFESPLPSSTENVHP 630
>Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 381 SVGRDGGCIASSASMRHFPSTLPSLRSMVHP 289
S G +GG I+ ++F S LPS VHP
Sbjct: 600 SGGEEGGSISPDLGHKNFESPLPSSTENVHP 630
>Z80214-3|CAB02265.1| 249|Caenorhabditis elegans Hypothetical
protein T23B5.3c protein.
Length = 249
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 381 SVGRDGGCIASSASMRHFPSTLPSLRSMVHP 289
S G +GG I+ ++F S LPS VHP
Sbjct: 33 SGGEEGGSISPDLGHKNFESPLPSSTENVHP 63
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -2
Query: 630 AT*PRRSSFTDTFLTLKPTLSPGIASCSASWCISTDLTS 514
+T P S+F T T+ T++PG C ++ ++ +LTS
Sbjct: 548 STVPVTSTFASTTTTVPITVAPGQCYCQSNVAVAFELTS 586
>U29515-1|AAC06328.1| 449|Caenorhabditis elegans fem-2 protein.
Length = 449
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +2
Query: 524 SVEMHHEALQEAMPGDNVGFNVKNVSVKELRRGYVAGDSXNA 649
+++M + + A GD+ G+ + N+ ++L RG+ D A
Sbjct: 268 AIDMDQKLMALAWLGDSPGYVMSNIEFRQLTRGHSPSDEREA 309
>U28412-8|AAC46598.1| 449|Caenorhabditis elegans Feminization of xx
and xo animalsprotein 2 protein.
Length = 449
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +2
Query: 524 SVEMHHEALQEAMPGDNVGFNVKNVSVKELRRGYVAGDSXNA 649
+++M + + A GD+ G+ + N+ ++L RG+ D A
Sbjct: 268 AIDMDQKLMALAWLGDSPGYVMSNIEFRQLTRGHSPSDEREA 309
>Z81044-6|CAB02806.1| 360|Caenorhabditis elegans Hypothetical
protein C30H6.2 protein.
Length = 360
Score = 27.9 bits (59), Expect = 7.4
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Frame = -1
Query: 655 GWCVXRIASNVAATQFFHRY----VLDVEADVIAGHRLLQCLVVHLNRLNFGGNSCRSKY 488
G C+ + + A ++ H + V + +D I H + Q + VH + N G + +
Sbjct: 29 GACIGPLMTKDAKHRWLHFFLAMAVSTLSSDAIL-HIIPQVVGVHDHGHNHGHS--HEHH 85
Query: 487 HNHTRLENSCL-HSSNWHRSDSSYLV 413
H HT LEN H + H DS ++
Sbjct: 86 HEHTDLENGTSGHGHSHHHDDSDRIM 111
>Z70213-6|CAA94176.1| 167|Caenorhabditis elegans Hypothetical
protein ZK930.7 protein.
Length = 167
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 343 GARCDTASVTAD*EAPSLASSGRVQDRRNRNGASWTSGDRNSQAWY 480
G+RC+++S+ + ++ASSG V N S S N + Y
Sbjct: 16 GSRCESSSILTQNQPTTIASSGFVMSNPNVKSPSLPSSATNWNSEY 61
>U67954-1|AAB52605.2| 826|Caenorhabditis elegans Hypothetical
protein F41D9.1 protein.
Length = 826
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = -1
Query: 670 SESAFGWCVXRIASNVAATQFFHRYVLDVEADVIAGHRLLQCLVVHLNR 524
SE W + + ++ F+ + +L ++AD L++C V LN+
Sbjct: 252 SEETTFWMMTALIEDILPPNFYTQTLLGLQADERVSRHLMKCHVPDLNK 300
>Z99942-3|CAB17071.2| 585|Caenorhabditis elegans Hypothetical
protein H13N06.6 protein.
Length = 585
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 206 PATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDGKV 322
P T F + W N+++ DK W +D+K GKV
Sbjct: 132 PGTTQFYIAASWGSTNLVDIRDKR-----WVVDKKFGKV 165
>Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical
protein C49C3.13 protein.
Length = 499
Score = 27.5 bits (58), Expect = 9.8
Identities = 25/95 (26%), Positives = 35/95 (36%)
Frame = -2
Query: 636 SPAT*PRRSSFTDTFLTLKPTLSPGIASCSASWCISTDLTSVVIAAGANTTTIPGLRIPV 457
+P T S+ T+T T PT + A + + +T + I TTT
Sbjct: 293 TPTTTTTESTTTETTSTTTPTTTT-TAPTTTTTASTTTFKTTTITTTTQTTT--PTTTAT 349
Query: 456 STRPTGTVPIPPILYTS*RGKRRGFSVGRDGGCIA 352
+T+PT T P K F V GC A
Sbjct: 350 TTKPTTTTPTTTRTPVDCSAKCDPFWVSYSDGCYA 384
>AL033508-3|CAA22054.1| 315|Caenorhabditis elegans Hypothetical
protein Y106G6G.4 protein.
Length = 315
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/77 (27%), Positives = 33/77 (42%)
Frame = -2
Query: 654 GGAXLESPAT*PRRSSFTDTFLTLKPTLSPGIASCSASWCISTDLTSVVIAAGANTTTIP 475
GG+ + T P ++ T TL+P L+ +S +T +TS + TT IP
Sbjct: 156 GGSNTTNTTTAPPATNSTQIISTLRPPLNRSTSSTDVKENGTTHVTSANL---TGTTKIP 212
Query: 474 GLRIPVSTRPTGTVPIP 424
+ + T T P P
Sbjct: 213 VIVTTIGFTITSTDPPP 229
>AF068710-1|AAC17772.1| 419|Caenorhabditis elegans Hypothetical
protein T06A1.1 protein.
Length = 419
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 256 HIVTVPARYRYERHSSGIVTNFLN 185
H+++VP R+ Y RH + N LN
Sbjct: 321 HVMSVPKRFAYVRHYRSVDNNKLN 344
>AC006712-7|AAK39318.2| 264|Caenorhabditis elegans Hypothetical
protein Y119C1B.9 protein.
Length = 264
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = +2
Query: 104 GVNKMDSTEPPYHEARYEEIKKEVSSYIKKIGYNPATVAFVPISGWH-GDNMLEP 265
G K +T P +HE RY E + I +G P P WH D ++ P
Sbjct: 124 GTYKCAATIPNHHEQRYRAFSSEFA--INVVGIEPVCANPRPEVFWHTTDGIITP 176
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,830,524
Number of Sequences: 27780
Number of extensions: 348123
Number of successful extensions: 1168
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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