Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1028
(700 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 315 2e-86
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 315 2e-86
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 315 2e-86
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 315 2e-86
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 127 8e-30
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 113 1e-25
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 87 1e-17
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 77 1e-14
At2g31060.1 68415.m03790 elongation factor family protein contai... 37 0.015
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 33 0.24
At2g36390.1 68415.m04466 1,4-alpha-glucan branching enzyme / sta... 30 1.3
At3g17830.1 68416.m02273 DNAJ heat shock family protein similar ... 30 1.7
At4g16120.1 68417.m02443 phytochelatin synthetase-related contai... 29 2.2
At1g27720.1 68414.m03388 transcription initiation factor IID (TF... 29 2.2
At5g46180.1 68418.m05680 ornithine aminotransferase, putative / ... 29 3.9
At5g03650.1 68418.m00324 1,4-alpha-glucan branching enzyme / sta... 29 3.9
At1g23230.1 68414.m02906 expressed protein 29 3.9
At4g18650.1 68417.m02760 transcription factor-related contains w... 28 5.2
At3g25800.1 68416.m03211 serine/threonine protein phosphatase 2A... 28 5.2
At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to... 28 5.2
At1g13320.1 68414.m01546 serine/threonine protein phosphatase 2A... 28 5.2
At5g40360.1 68418.m04896 myb family transcription factor (MYB115... 28 6.8
At4g29440.1 68417.m04203 expressed protein contains Pfam profil... 28 6.8
At1g76410.1 68414.m08881 zinc finger (C3HC4-type RING finger) fa... 28 6.8
At1g27595.1 68414.m03365 expressed protein similar to Symplekin ... 28 6.8
At1g26130.1 68414.m03190 haloacid dehalogenase-like hydrolase fa... 28 6.8
At1g01060.2 68414.m00007 myb family transcription factor contain... 28 6.8
At1g01060.1 68414.m00006 myb family transcription factor contain... 28 6.8
At5g62240.1 68418.m07815 expressed protein various predicted pro... 27 9.0
At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)... 27 9.0
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea... 27 9.0
At1g70060.1 68414.m08061 paired amphipathic helix repeat-contain... 27 9.0
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 27 9.0
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 315 bits (773), Expect = 2e-86
Identities = 152/218 (69%), Positives = 177/218 (81%)
Frame = +2
Query: 11 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIK 190
TG FEAGISK+GQTREHALLAFTLGVKQ+I NKMD+T P Y +ARY+EI KEVSSY+K
Sbjct: 120 TGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVSSYLK 179
Query: 191 KIGYNPATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDGKVEGKCLIEALDAIQPPS 370
K+GYNP + FVPISG+ GDNM+E S + W+KG T L+EALD I P
Sbjct: 180 KVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPT------------LLEALDQINEPK 227
Query: 371 RPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFAPAAITTEVKSVEMHHEAL 550
RP++KPLRLPLQDVYKIGGIGTVPVGRVETG++KPGMVV FAP +TTEVKSVEMHHE+L
Sbjct: 228 RPSDKPLRLPLQDVYKIGGIGTVPVGRVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESL 287
Query: 551 QEAMPGDNVGFNVKNVSVKELRRGYVAGDSXNAPPKGA 664
EA+PGDNVGFNVKNV+VK+L+RGYVA +S + P KGA
Sbjct: 288 LEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGA 325
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 315 bits (773), Expect = 2e-86
Identities = 152/218 (69%), Positives = 177/218 (81%)
Frame = +2
Query: 11 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIK 190
TG FEAGISK+GQTREHALLAFTLGVKQ+I NKMD+T P Y +ARY+EI KEVSSY+K
Sbjct: 120 TGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVSSYLK 179
Query: 191 KIGYNPATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDGKVEGKCLIEALDAIQPPS 370
K+GYNP + FVPISG+ GDNM+E S + W+KG T L+EALD I P
Sbjct: 180 KVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPT------------LLEALDQINEPK 227
Query: 371 RPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFAPAAITTEVKSVEMHHEAL 550
RP++KPLRLPLQDVYKIGGIGTVPVGRVETG++KPGMVV FAP +TTEVKSVEMHHE+L
Sbjct: 228 RPSDKPLRLPLQDVYKIGGIGTVPVGRVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESL 287
Query: 551 QEAMPGDNVGFNVKNVSVKELRRGYVAGDSXNAPPKGA 664
EA+PGDNVGFNVKNV+VK+L+RGYVA +S + P KGA
Sbjct: 288 LEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGA 325
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 315 bits (773), Expect = 2e-86
Identities = 152/218 (69%), Positives = 177/218 (81%)
Frame = +2
Query: 11 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIK 190
TG FEAGISK+GQTREHALLAFTLGVKQ+I NKMD+T P Y +ARY+EI KEVSSY+K
Sbjct: 120 TGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVSSYLK 179
Query: 191 KIGYNPATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDGKVEGKCLIEALDAIQPPS 370
K+GYNP + FVPISG+ GDNM+E S + W+KG T L+EALD I P
Sbjct: 180 KVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPT------------LLEALDQINEPK 227
Query: 371 RPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFAPAAITTEVKSVEMHHEAL 550
RP++KPLRLPLQDVYKIGGIGTVPVGRVETG++KPGMVV FAP +TTEVKSVEMHHE+L
Sbjct: 228 RPSDKPLRLPLQDVYKIGGIGTVPVGRVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESL 287
Query: 551 QEAMPGDNVGFNVKNVSVKELRRGYVAGDSXNAPPKGA 664
EA+PGDNVGFNVKNV+VK+L+RGYVA +S + P KGA
Sbjct: 288 LEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGA 325
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 315 bits (773), Expect = 2e-86
Identities = 152/218 (69%), Positives = 177/218 (81%)
Frame = +2
Query: 11 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIK 190
TG FEAGISK+GQTREHALLAFTLGVKQ+I NKMD+T P Y +ARY+EI KEVSSY+K
Sbjct: 120 TGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVSSYLK 179
Query: 191 KIGYNPATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDGKVEGKCLIEALDAIQPPS 370
K+GYNP + FVPISG+ GDNM+E S + W+KG T L+EALD I P
Sbjct: 180 KVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPT------------LLEALDQINEPK 227
Query: 371 RPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFAPAAITTEVKSVEMHHEAL 550
RP++KPLRLPLQDVYKIGGIGTVPVGRVETG++KPGMVV FAP +TTEVKSVEMHHE+L
Sbjct: 228 RPSDKPLRLPLQDVYKIGGIGTVPVGRVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESL 287
Query: 551 QEAMPGDNVGFNVKNVSVKELRRGYVAGDSXNAPPKGA 664
EA+PGDNVGFNVKNV+VK+L+RGYVA +S + P KGA
Sbjct: 288 LEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGA 325
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 127 bits (306), Expect = 8e-30
Identities = 76/217 (35%), Positives = 117/217 (53%), Gaps = 3/217 (1%)
Frame = +2
Query: 14 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIKK 193
GEFE G + GQTREH LA TLGV +LIV VNKMD + + RY+EI++++ ++K
Sbjct: 215 GEFETGYERGGQTREHVQLAKTLGVSKLIVVVNKMDDPTVNWSKERYDEIEQKMVPFLKA 274
Query: 194 IGYN-PATVAFVPISGWHGDNMLE--PSDKMPWFKGWTIDRKDGKVEGKCLIEALDAIQP 364
GYN V F+PISG G NM + + PW W+ G E LD+I+
Sbjct: 275 SGYNTKKDVVFLPISGLMGKNMDQRMGQEICPW---WS---------GPSFFEVLDSIEI 322
Query: 365 PSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFAPAAITTEVKSVEMHHE 544
P R P R+P+ D +K +GTV +G+VE+G ++ G +V P +V ++ +
Sbjct: 323 PPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSIREGDSLVVMPNKEQVKVVAIYCDED 380
Query: 545 ALQEAMPGDNVGFNVKNVSVKELRRGYVAGDSXNAPP 655
++ A PG+N+ + + +++ G+V N P
Sbjct: 381 KVKRAGPGENLRVRITGIEDEDILSGFVLSSIVNPVP 417
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 113 bits (272), Expect = 1e-25
Identities = 65/208 (31%), Positives = 110/208 (52%), Gaps = 3/208 (1%)
Frame = +2
Query: 14 GEFEAGISK-NGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIK 190
G FEAG GQTREHA + GV+Q+IV +NKMD Y + R++ IK+ V S+++
Sbjct: 353 GAFEAGFDNLKGQTREHARVLRGFGVEQVIVAINKMDIVG--YSKERFDLIKQHVGSFLQ 410
Query: 191 KIGYNPATVAFVPISGWHGDNMLE-PSDKMPWFKGWTIDRKDGKVEGKCLIEALDAIQPP 367
+ +++ ++P+S N++ PSD W +G CL++A+D+++ P
Sbjct: 411 SCRFKDSSLTWIPLSAMENQNLVAAPSDNR--LSSW--------YQGPCLLDAVDSVKSP 460
Query: 368 SRPTEKPLRLPLQDVYKIGGIGTVPV-GRVETGILKPGMVVVFAPAAITTEVKSVEMHHE 544
R KPL +P+ D + G V G++E G ++PG V+ P+ ++S+E +
Sbjct: 461 DRDVSKPLLMPICDAVRSTSQGQVSACGKLEAGAVRPGSKVMVMPSGDQGTIRSLERDSQ 520
Query: 545 ALQEAMPGDNVGFNVKNVSVKELRRGYV 628
A A GDNV ++ + ++ G V
Sbjct: 521 ACTIARAGDNVALALQGIDANQVMAGDV 548
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 86.6 bits (205), Expect = 1e-17
Identities = 67/212 (31%), Positives = 97/212 (45%), Gaps = 5/212 (2%)
Frame = +2
Query: 47 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIKKIGYNPATVAFV 226
QT+EH LLA +GV ++V +NK D + E ++ EV + +N + +
Sbjct: 182 QTKEHILLAKQVGVPDMVVFLNKEDQVDDA---ELLELVELEVRELLSSYEFNGDDIPII 238
Query: 227 PISGWHGDNMLEPSDKMPWFKGWTIDRKDGKVEGKC--LIEALDAIQP-PSRPTEKPLRL 397
S L + K + R D K K L++A+D P P R TE P L
Sbjct: 239 SGSALLAVETLTENPK--------VKRGDNKWVDKIYELMDAVDDYIPIPQRQTELPFLL 290
Query: 398 PLQDVYKIGGIGTVPVGRVETGILKPGMVVVFAPAAITTE--VKSVEMHHEALQEAMPGD 571
++DV+ I G GTV GRVE G +K G V T V VEM + L EA+ GD
Sbjct: 291 AVEDVFSITGRGTVATGRVERGTVKVGETVDLVGLRETRSYTVTGVEMFQKILDEALAGD 350
Query: 572 NVGFNVKNVSVKELRRGYVAGDSXNAPPKGAF 667
NVG ++ + +++RG V + P F
Sbjct: 351 NVGLLLRGIQKADIQRGMVLAKPGSITPHTKF 382
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 77.0 bits (181), Expect = 1e-14
Identities = 60/200 (30%), Positives = 96/200 (48%), Gaps = 6/200 (3%)
Frame = +2
Query: 47 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIKKIGYNPATVAFV 226
QT+EH LLA +GV L+ +NK+D + P E +E+ S+ K G + +
Sbjct: 170 QTKEHILLARQVGVPSLVCFLNKVDVVDDPELLELVEMELRELLSFYKFPGDDIPIIRGS 229
Query: 227 PISGWHGDNMLEPSDKMPWFKGWTIDRKDGKVEGKCLIEALDAIQP-PSRPTEKPLRLPL 403
+S G N D++ G+ L++A+D P P R +KP +P+
Sbjct: 230 ALSALQGTN-----DEI------------GRQAILKLMDAVDEYIPDPVRVLDKPFLMPI 272
Query: 404 QDVYKIGGIGTVPVGRVETGILKPGMVVVF-----APAAITTEVKSVEMHHEALQEAMPG 568
+DV+ I G GTV GR+E G++K G V + + V VEM + L G
Sbjct: 273 EDVFSIQGRGTVATGRIEQGVIKVGEEVEILGLREGGVPLKSTVTGVEMFKKILDNGQAG 332
Query: 569 DNVGFNVKNVSVKELRRGYV 628
DNVG ++ + ++++RG V
Sbjct: 333 DNVGLLLRGLKREDIQRGMV 352
>At2g31060.1 68415.m03790 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain, PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 527
Score = 36.7 bits (81), Expect = 0.015
Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 4/156 (2%)
Frame = +2
Query: 23 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIKKIGY 202
+AG QT+ A G++ +++ +NK+D P E R +E++ V G
Sbjct: 10 DAGEGPLAQTKFVLAKALKYGLRPILL-LNKVD--RPSVTEERCDEVESLVFDLFANCGA 66
Query: 203 NPATVAFVPISGWHGDNMLEPSDKMPWFKGWTIDRKDGKVEGKCLIEALDAI----QPPS 370
+ F P+ L S K W + KD V+ K + + LDA+ QPP
Sbjct: 67 TEEQLDF-PV--------LYASAKEGWAS--STYTKDPPVDAKNMADLLDAVVRHVQPPK 115
Query: 371 RPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPG 478
++P + + + K +G + GRV +G+++ G
Sbjct: 116 ANLDEPFLMLVSMMEKDFYLGRILTGRVTSGVVRVG 151
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 32.7 bits (71), Expect = 0.24
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Frame = +2
Query: 347 LDAIQPPSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVVFAPAAITTEVKS 526
++ I PP +E PLR+ L D + G + V G+L G V FA + + EV
Sbjct: 241 IERIPPPPGISESPLRMLLFDSFFNEYKGVICYVSVVDGMLSKGDKVSFAASGQSYEVLD 300
Query: 527 VEMHHEALQEA--MPGDNVGFNVKNV-SVKELRRG 622
V + H L + VG+ V + + KE R G
Sbjct: 301 VGIMHPELTSTGMLLTGQVGYIVTGMRTTKEARIG 335
>At2g36390.1 68415.m04466 1,4-alpha-glucan branching enzyme / starch
branching enzyme class II (SBE2-1) nearly identical to
starch branching enzyme class II [Arabidopsis thaliana]
GI:619939
Length = 858
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Frame = +2
Query: 116 MDSTEPPYHEARYEEIKKEVSSYIKKIGYNPATV------AFVPISGWHGDNMLEPSDK 274
M STEP + Y + +V IKK+GYN + A+ G+H N PS +
Sbjct: 335 MSSTEPKINT--YANFRDDVLPRIKKLGYNAVQIMAIQEHAYYASFGYHVTNFFAPSSR 391
>At3g17830.1 68416.m02273 DNAJ heat shock family protein similar to
SP|P35514 Chaperone protein dnaJ {Lactococcus lactis};
contains Pfam profiles PF00226: DnaJ domain, PF01556:
DnaJ C terminal region, PF00684: DnaJ central domain (4
repeats)
Length = 517
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -2
Query: 534 ISTDLTSVVIAAGANTTTIPG---LRIPVSTRPTGTVPIP 424
I+ D T ++ A T+ G LRIP T+P TV +P
Sbjct: 339 INIDFTDAILGATTKVETVEGSMDLRIPPGTQPGDTVKLP 378
>At4g16120.1 68417.m02443 phytochelatin synthetase-related contains
Pfam PF04833: Phytochelatin synthetase-like conserved
region; supporting cDNA gi|26449620|dbj|AK117261.1|
Length = 661
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 123 ESILFTPTISCFTPRVKASRACSRVCPFLLIP 28
+SI+ T +C KA+RACS P LL+P
Sbjct: 431 DSIVPCKTCACGCSSNKAARACSATAPSLLLP 462
>At1g27720.1 68414.m03388 transcription initiation factor IID
(TFIID) component TAF4 family protein contains Pfam
profile PF05236: Transcription initiation factor TFIID
component TAF4 family
Length = 682
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +2
Query: 251 NMLEPSDKMPWFKGWTIDRKDGKVEGKCLIEALDAIQPPSRPTEK 385
NM PS+ +P T+ K V K +EAL + PPSR +K
Sbjct: 381 NMPAPSETIPKIANVTVTPKMPSVGQKKPLEALGSSLPPSRKKQK 425
>At5g46180.1 68418.m05680 ornithine aminotransferase, putative /
ornithine--oxo-acid aminotransferase, putative similar
to SP|Q92413 Ornithine aminotransferase (EC 2.6.1.13)
(Ornithine--oxo-acid aminotransferase) [Aspergillus
nidulans] {Emericella nidulans}; contains Pfam profile
PF00202: aminotransferase, class III
Length = 475
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = +2
Query: 77 TLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIKKIGYNPATVAFVPISGWHGDNM 256
T GV++ G+ + +S PP R E++ E S++ Y+P V F S +G +
Sbjct: 18 TAGVRRSYGGLPQSNSKSPPSSSQRLMELESEFSAH----NYHPVPVVF---SRANGSTI 70
Query: 257 LEPSDK 274
+P K
Sbjct: 71 WDPEGK 76
>At5g03650.1 68418.m00324 1,4-alpha-glucan branching enzyme / starch
branching enzyme class II (SBE2-2) identical to starch
branching enzyme class II [Arabidopsis thaliana]
GI:726490
Length = 716
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Frame = +2
Query: 116 MDSTEPPYHEARYEEIKKEVSSYIKKIGYNPATV------AFVPISGWHGDNMLEPSDK 274
M STEP + Y + +V IKK+GYN + ++ G+H N PS +
Sbjct: 211 MSSTEPMVNT--YANFRDDVLPRIKKLGYNAVQIMAIQEHSYYASFGYHVTNFFAPSSR 267
>At1g23230.1 68414.m02906 expressed protein
Length = 1615
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = -2
Query: 600 DTFLTLKPTLSPGIASCSASWCISTDLTSVVIAAGANTTTIPGLRIPVSTRPTGTVP 430
DTFL P+L +++ AS +S + + AG++ T+ + +PVS PT +P
Sbjct: 130 DTFL---PSLLSSVSAAEAS--LSQGVQAAAATAGSSATSSQSV-VPVSVNPTSLLP 180
>At4g18650.1 68417.m02760 transcription factor-related contains weak
similarity to TGACG-sequence specific DNA-binding
protein TGA-2.1 (TGA2.1) (Swiss-Prot:O24160) [Nicotiana
tabacum]
Length = 232
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/57 (19%), Positives = 29/57 (50%)
Frame = +2
Query: 107 VNKMDSTEPPYHEARYEEIKKEVSSYIKKIGYNPATVAFVPISGWHGDNMLEPSDKM 277
++K+ + Y+ A++ I+++V ++ + NP A ++GW + D++
Sbjct: 48 ISKLTTHHKAYYTAKWAAIREDVLAFFGSVWLNPLENACSWLTGWKPSMVFRMVDRL 104
>At3g25800.1 68416.m03211 serine/threonine protein phosphatase 2A
(PP2A) 65 KDa regulatory subunit A identical to protein
phosphatase 2A 65 kDa regulatory subunit (pDF1)
GI:683502 from [Arabidopsis thaliana]
Length = 587
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -2
Query: 318 LPSLRSMVHPLNQGILSEGSSILSPCQPDIGTNATVAGL*PIFL 187
LP ++ + +Q + S +S++ P +G +AT+ L PIFL
Sbjct: 321 LPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLLPIFL 364
>At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to
homeotic protein HAT 3.1 (GI:11994474) [Arabidopsis
thaliana]
Length = 723
Score = 28.3 bits (60), Expect = 5.2
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +2
Query: 152 YEEIKKEVSSYIKKIGYNPATVAFVPISGWHGDNM 256
Y IKK++ ++ +I Y + + + GW G ++
Sbjct: 177 YTRIKKKLRYFLNRINYEQSLIDAYSLEGWKGSSL 211
>At1g13320.1 68414.m01546 serine/threonine protein phosphatase 2A
(PP2A) 65 kDa regulatory subunit, putative similar to
protein phosphatase 2A 65 kDa regulatory subunit
GI:683502 from [Arabidopsis thaliana]
Length = 587
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -2
Query: 318 LPSLRSMVHPLNQGILSEGSSILSPCQPDIGTNATVAGL*PIFL 187
LP ++ + +Q + S +S++ P +G +AT+ L PIFL
Sbjct: 321 LPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLLPIFL 364
>At5g40360.1 68418.m04896 myb family transcription factor (MYB115)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 359
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -1
Query: 511 GNSCRSKYHNHTRLENSCLHSSNWHRSDSSYLVHVLK 401
G CR ++HNH R + ++W + L+ V K
Sbjct: 193 GKQCRERWHNHLRPN---IKKNDWSEEEDQILIEVHK 226
>At4g29440.1 68417.m04203 expressed protein contains Pfam profile:
PF03398 eukaryotic protein of unknown function, DUF292
Length = 1090
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 16 RVRSRYQ*EWTDSRTRPACFHS 81
RV RYQ + T+SRTRP HS
Sbjct: 770 RVSFRYQEKRTESRTRPTHLHS 791
>At1g76410.1 68414.m08881 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 185
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 98 IVGVNKMDSTEPPYHEARYEEIKKEVSSYIKKIGYNP 208
I N+ D T PP A + +KK+V + K+ Y+P
Sbjct: 57 IASRNRSDQTHPPPVAAANKGLKKKVLRSLPKLTYSP 93
>At1g27595.1 68414.m03365 expressed protein similar to Symplekin
(SP:Q92797) {Homo sapiens}
Length = 1091
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 342 SMRHFPSTLPSLRSMV-HPLNQGILSEGSSILSPCQP 235
SM+H PST P+L S V P + + S +++ SP P
Sbjct: 253 SMKHLPSTPPTLASSVATPADIVVSSSTNTVHSPTPP 289
>At1g26130.1 68414.m03190 haloacid dehalogenase-like hydrolase
family protein similar to Potential
phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
sapiens [SP|Q9Y2Q0, SP|O43520], Mus musculus [SP|P98200,
SP|P70704], {Bos taurus} SP|Q29449; contains InterPro
accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 1184
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +2
Query: 23 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSS 181
E+G +TR+H G++ LI+ ++D E R E K VS+
Sbjct: 629 ESGRKYEKETRDHVNEYADAGLRTLILAYRELDENEYEVFTERISEAKNSVSA 681
>At1g01060.2 68414.m00007 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain;
identical to cDNA LATE ELONGATED HYPOCOTYL MYB
transcription factor GI:3281845
Length = 645
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 287 KGWTIDRKDGKVEGKCLIEALDAIQPPSRPTEKP 388
K +T K+ +V+G + +ALD PP RP KP
Sbjct: 67 KFFTKLEKEAEVKGIPVCQALDIEIPPPRPKRKP 100
>At1g01060.1 68414.m00006 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain;
identical to cDNA LATE ELONGATED HYPOCOTYL MYB
transcription factor GI:3281845
Length = 645
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 287 KGWTIDRKDGKVEGKCLIEALDAIQPPSRPTEKP 388
K +T K+ +V+G + +ALD PP RP KP
Sbjct: 67 KFFTKLEKEAEVKGIPVCQALDIEIPPPRPKRKP 100
>At5g62240.1 68418.m07815 expressed protein various predicted
proteins, Arabidopsis thaliana; expression supported by
MPSS
Length = 366
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -2
Query: 459 VSTRPTGTVPIPPILYTS*RGKRRGFSVGRDGGCIASSASMRH 331
VS+R TVP P L T+ R +R V IA+S S RH
Sbjct: 193 VSSRAKLTVPKEPNLRTAERSERHRSKVNTQREQIATSNSKRH 235
>At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)
identical to myb-related transcription factor (CCA1)
GI:4090569 from [Arabidopsis thaliana]
Length = 608
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 308 KDGKVEGKCLIEALDAIQPPSRPTEKP 388
K+ + +G + +ALD PP RP KP
Sbjct: 74 KEAEAKGVAMGQALDIAIPPPRPKRKP 100
>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
family protein similar to CPY (GI:3096961) {Chironomus
thummi}; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
Length = 2471
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +1
Query: 400 SSGRVQDRRNRNGASWTSGD--RNSQAWY 480
++G+++ +RN +G S T GD +N WY
Sbjct: 2341 ATGKMKKQRNPDGGSSTDGDQNKNGMLWY 2369
>At1g70060.1 68414.m08061 paired amphipathic helix repeat-containing
protein similar to transcription co-repressor Sin3
[Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 1362
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 32 ISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIK 166
IS+ + + ALLA G ++ I D +P HE Y+ IK
Sbjct: 666 ISEKKRGEDDALLALAAGNRRTISSNMSFDYPDPDLHEDLYQLIK 710
>At1g27900.1 68414.m03419 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 700
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 591 LTLKPTLSPGIASCSASWCISTDLTSVVIAAGANTTTIPGLRIP 460
L L+P+LS + + + C+S LT VV A TT +P P
Sbjct: 426 LPLEPSLSRTLIEANETGCLSQALT-VVAMLSAETTLLPARSKP 468
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,143,899
Number of Sequences: 28952
Number of extensions: 327648
Number of successful extensions: 1188
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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