Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1026
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|...    29   0.94 
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    27   3.8  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   3.8  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    26   5.0  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    26   5.0  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   8.7  

>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 342

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +3

Query: 51  QFMAEDYYYDIVTRDPDDLMREKENEVRALRAFQADCAEDVQVKPDLVVNLKSGD-WQTE 227
           +F  ++Y+Y  V      L  + E+ VR LR    +CA+  Q   +++V+ ++ + W+  
Sbjct: 78  RFSLKNYHYYEVAATCIFLATKVEDSVRKLRDIVINCAKVAQKNSNVLVDEQTKEYWRWR 137

Query: 228 DVSL 239
           DV L
Sbjct: 138 DVIL 141


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -1

Query: 159 NQPGMLSGPGLHSLSLASDRQD--LSSRYRNNSPLP 58
           N P +LS    H LSL ++  D   + RY N SP+P
Sbjct: 528 NAPQILSS--FHDLSLQNESFDEMFNGRYENGSPIP 561


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 20/75 (26%), Positives = 32/75 (42%)
 Frame = -3

Query: 370  SSISFSAMILSFISGILDMASFILNTPCAVMSPSFISTQRAHFLRDTSSVCQSPLFKLTT 191
            S  SF ++   F+S ++  A +IL+ P      SFI     HF + T++           
Sbjct: 1975 SIFSFFSLFWWFLSRVVQ-ARYILSLPFFFFGISFILVAITHFFQKTTACSVIQHIAAYV 2033

Query: 190  KSGLTWTSSAQSAWN 146
             +  + T S   AWN
Sbjct: 2034 YAISSSTGSLYFAWN 2048


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 137 GPDFILFLSHQIVRISRHDIVIIVLCHELPTAQK 36
           GP++I FLSH     ++H I  I L    P  Q+
Sbjct: 296 GPEYIKFLSHPKFSRAQHFISCIELASNNPVFQR 329


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = +3

Query: 237 LKKWALCVLMKLGLMTAQGVFKMNEAMSKIPDMNDKI 347
           +K+W LCV++       Q +F +   M  + D++ ++
Sbjct: 561 MKEWFLCVIVDNDFQNGQSLFDVFNKMRSLKDIHPEL 597


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 23/81 (28%), Positives = 38/81 (46%)
 Frame = -3

Query: 397 GVVAWRLRQSSISFSAMILSFISGILDMASFILNTPCAVMSPSFISTQRAHFLRDTSSVC 218
           GV  W    +++S+     +F+  I      IL+T  +  S S  S   +  L  TSS+ 
Sbjct: 294 GVTIWDTSLAAMSYDNSSETFVEAIHK----ILDTK-SKHSSSKSSHDSSQGLESTSSIA 348

Query: 217 QSPLFKLTTKSGLTWTSSAQS 155
            +P   +++ S  + TSSA S
Sbjct: 349 LNPTSSISSTSSSSSTSSAIS 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,930,591
Number of Sequences: 5004
Number of extensions: 59049
Number of successful extensions: 141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)