Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1026
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0662 - 23229957-23230204,23231021-23231160,23231257-232313... 31 0.98
02_01_0790 + 5925048-5925165,5926133-5926268,5926832-5926913,592... 31 0.98
03_02_0224 + 6557284-6558052,6559057-6559131,6560125-6561395 31 1.3
12_01_0427 + 3359766-3360092,3360425-3360541,3360738-3360893,336... 30 1.7
08_02_0067 - 11863092-11863104,11863432-11863547,11863610-118639... 29 3.0
02_01_0595 + 4420112-4420401,4420518-4420607,4421883-4421931,442... 29 3.9
11_04_0442 - 17790811-17790889,17791047-17791114,17791144-177911... 28 9.1
>06_03_0662 -
23229957-23230204,23231021-23231160,23231257-23231394,
23231501-23231676,23232071-23232152,23233531-23233666,
23237028-23237145
Length = 345
Score = 31.1 bits (67), Expect = 0.98
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 407 GVVWRCCLETEAIVNKFLCYDFIIHIWNLRHG-FVH-FEH 294
G VW CCL+T A+ DF +W+ G +H FEH
Sbjct: 62 GAVWSCCLDTNALRAASGSADFSAKVWDALTGDELHSFEH 101
>02_01_0790 +
5925048-5925165,5926133-5926268,5926832-5926913,
5927772-5927947,5928594-5928680,5928817-5928956,
5929546-5929784
Length = 325
Score = 31.1 bits (67), Expect = 0.98
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 407 GVVWRCCLETEAIVNKFLCYDFIIHIWNLRHG-FVH-FEH 294
G VW CCL+T A+ DF +W+ G +H FEH
Sbjct: 62 GAVWSCCLDTNALRAASGSADFSAKVWDALTGEELHSFEH 101
>03_02_0224 + 6557284-6558052,6559057-6559131,6560125-6561395
Length = 704
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = -3
Query: 262 STQRAHFLRDTSSVCQSPLFKLTTKSGLTWTSSAQSAWNAL 140
ST A F+ TSS+C S + T KS T S Q+A NA+
Sbjct: 624 STDDATFMSTTSSLCSSAPSRCTDKSWGTAKSKRQAAANAV 664
>12_01_0427 +
3359766-3360092,3360425-3360541,3360738-3360893,
3361009-3361144,3361303-3361436,3361832-3361987,
3362496-3362594,3362817-3362932,3363358-3363532,
3363807-3363885,3363989-3364132,3364206-3364319,
3364415-3364536,3364929-3365011,3365091-3365188,
3365300-3365420,3366237-3366333,3366782-3366874,
3366948-3367053,3367395-3367540,3367617-3367697,
3367838-3367921,3367997-3368132,3368334-3368400,
3368943-3369102
Length = 1048
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +3
Query: 93 DPDDLMREKENEVRALRAFQADCAEDVQVKPDLVVNLKSGDWQTEDVSLKKWALCVLMKL 272
+P L EK + R L F A C ++V L SG+W + ++++K L+K+
Sbjct: 595 EPHPLAYEKRSSQR-LPNFTATCMRSLEVMIQLE---GSGNWPLDPIAMEKTKSAFLLKM 650
Query: 273 G-LMTAQGVF 299
G + QG+F
Sbjct: 651 GESLEDQGMF 660
>08_02_0067 -
11863092-11863104,11863432-11863547,11863610-11863950,
11864978-11865331,11866055-11866150,11866812-11866980,
11867541-11867618,11867745-11867926,11868010-11868094,
11868545-11868648,11869510-11869590,11870123-11870240,
11871299-11871430,11871635-11871788,11871838-11871917
Length = 700
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/79 (20%), Positives = 38/79 (48%)
Frame = +3
Query: 81 IVTRDPDDLMREKENEVRALRAFQADCAEDVQVKPDLVVNLKSGDWQTEDVSLKKWALCV 260
+V +++M ++V+ + CAED+ + + + +K+ D QT ++ + K
Sbjct: 72 LVAEHAEEIMESSSSDVQ-----MSHCAEDLNSESTIEIKIKTLDSQTYNLRVNKRVPVP 126
Query: 261 LMKLGLMTAQGVFKMNEAM 317
L+K + T G+ + +
Sbjct: 127 LLKEKIATVTGILSEQQRL 145
>02_01_0595 +
4420112-4420401,4420518-4420607,4421883-4421931,
4423337-4424020
Length = 370
Score = 29.1 bits (62), Expect = 3.9
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = -3
Query: 427 HLM*FHAASCGVVAWRLRQSSISFSAMILSFISGILDMASFILNTPCAVMSPSFISTQRA 248
HL+ H+ VV W+L + IS + ++ SF+ + +F+ + P V S IS A
Sbjct: 189 HLLACHSRRASVVFWQLDYAGIS-AMIVASFVPPV--YYAFLCHRPARVAYLSAISALGA 245
Query: 247 HFLRD-TSSVCQSPLFK 200
+ S C SP F+
Sbjct: 246 LVVGALLSPPCSSPRFR 262
>11_04_0442 - 17790811-17790889,17791047-17791114,17791144-17791166,
17791210-17795913,17797414-17797624,17798478-17798666
Length = 1757
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/72 (25%), Positives = 32/72 (44%)
Frame = +3
Query: 60 AEDYYYDIVTRDPDDLMREKENEVRALRAFQADCAEDVQVKPDLVVNLKSGDWQTEDVSL 239
A Y D + ++ M +EN LR + E V +L+ ++K+G W D+
Sbjct: 871 ASAYIGDRLMSMAENNMLTRENVYSLLRLIRF-MREKVLSPSELINSVKNGKWMKTDIGY 929
Query: 240 KKWALCVLMKLG 275
+ A C++ G
Sbjct: 930 RSPADCIIKDSG 941
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,284,567
Number of Sequences: 37544
Number of extensions: 357470
Number of successful extensions: 793
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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