Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1026
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17008| Best HMM Match : Galactosyl_T (HMM E-Value=3.6e-30)          31   1.00 
SB_57902| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_56974| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_21167| Best HMM Match : KH_1 (HMM E-Value=0)                        29   5.3  
SB_54381| Best HMM Match : Trigger_C (HMM E-Value=0.55)                28   7.0  
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)              28   7.0  

>SB_17008| Best HMM Match : Galactosyl_T (HMM E-Value=3.6e-30)
          Length = 508

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 635 LDGANLNITVNFSDCNKYCLWTV 703
           L G +LN+T N+ D N YCL++V
Sbjct: 150 LPGRSLNVTSNYRDLNIYCLFSV 172


>SB_57902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +3

Query: 240 KKWALCV-LMKLGLMTAQGVFKMNEAMSKIPDMNDKIIAEKLIDDC 374
           K W L + L+K+ ++TAQ VF  ++   KIP   D   A+ ++DDC
Sbjct: 116 KPWKLLIQLIKIIIVTAQIVFDNSKHDGKIPVTLD---ADGIMDDC 158


>SB_56974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 785

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 629 INLDGANLNITVNFSDCNKYCLW 697
           ++LDG   ++  N S CNK C W
Sbjct: 244 VDLDGGEKDVKHNASSCNKICDW 266


>SB_21167| Best HMM Match : KH_1 (HMM E-Value=0)
          Length = 1650

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 114  EKENEVRALRAFQADCAEDVQVKPDLV 194
            E ENE RALR+F+ D   D Q  P ++
Sbjct: 986  EAENEDRALRSFKMDVKVDRQYHPKII 1012


>SB_54381| Best HMM Match : Trigger_C (HMM E-Value=0.55)
          Length = 607

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 520 KLTRKTTSKISNKQATSIGLKLNNRNSVKVRMSV 621
           K+T K T+K++NK    +  K+ N+ + KV   V
Sbjct: 108 KMTNKVTNKVANKVTNKVANKVTNKVTNKVTNKV 141


>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
          Length = 1452

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 114 EKENEVRALRAFQADCAEDVQVKPDLVVNLKSGDWQTEDVSLKKW 248
           +K+N   A  AF+AD  E+VQ K D V   K G  + +    K W
Sbjct: 458 DKQNRTSAFLAFEADNLEEVQGKHDTVPE-KFGRSKAQLELFKMW 501


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,559,446
Number of Sequences: 59808
Number of extensions: 437347
Number of successful extensions: 1101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)