Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1026
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z81067-5|CAD92378.1|  965|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z81503-1|CAB04111.1|  305|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AL032646-10|CAA21681.1|  725|Caenorhabditis elegans Hypothetical...    28   6.2  
Z99269-2|CAI79215.1|  147|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z66511-1|CAA91314.1|  537|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U23523-1|AAC46560.2|  305|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical
           protein F31E3.4 protein.
          Length = 1131

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/65 (20%), Positives = 31/65 (47%)
 Frame = +3

Query: 225 EDVSLKKWALCVLMKLGLMTAQGVFKMNEAMSKIPDMNDKIIAEKLIDDCLSLQATTPHD 404
           EDV L +WA  +  ++     +G+ ++++ +S +PD ++       +D  +       +D
Sbjct: 752 EDVDLPEWAHYIPSRIAAQLCEGIVRLSD-VSDLPDYDEPSAVIYELDAMIHAVGNGEND 810

Query: 405 AAWNY 419
             W +
Sbjct: 811 VNWTH 815


>Z81067-5|CAD92378.1|  965|Caenorhabditis elegans Hypothetical
           protein F23A7.7 protein.
          Length = 965

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/66 (25%), Positives = 33/66 (50%)
 Frame = +3

Query: 234 SLKKWALCVLMKLGLMTAQGVFKMNEAMSKIPDMNDKIIAEKLIDDCLSLQATTPHDAAW 413
           +LKKW   +L   G +  Q    M E + +   M+  I+ +KL+D+    +     ++++
Sbjct: 206 NLKKWLELILNCYGNIIIQTKKSMFEELPRSCPMSKGILKQKLLDEMADDEMWMHFESSF 265

Query: 414 NYIKCH 431
           + IK H
Sbjct: 266 DGIKVH 271


>Z81503-1|CAB04111.1|  305|Caenorhabditis elegans Hypothetical
           protein F14F7.1 protein.
          Length = 305

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +2

Query: 131 PGPESIPG*LCGGRPGQAGFSG 196
           PGP   PG   GGRPG AG  G
Sbjct: 232 PGPAGHPGSSGGGRPGPAGPKG 253


>AL032646-10|CAA21681.1|  725|Caenorhabditis elegans Hypothetical
           protein Y54E2A.11a protein.
          Length = 725

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
 Frame = +3

Query: 66  DYYYDIVTRDPDDLMREKENEVRALRAFQADCAEDVQVKPDLVVNLKSGDWQTEDVSLKK 245
           D  Y    + P+    E+E ++  +  F+++  E  + +P  + N+K  +W      L  
Sbjct: 314 DEKYFACLKAPEKDKLEREQKINGISIFESEKFELYEGRPVNIENIKQFEWSPTSTVLAY 373

Query: 246 WALC---VLMKLGLMTAQGVFKMNEA 314
           ++ C   V  + GL+    + ++  A
Sbjct: 374 YSECTDAVPAEFGLLQVPSMQRLRSA 399


>Z99269-2|CAI79215.1|  147|Caenorhabditis elegans Hypothetical
           protein W10C6.2 protein.
          Length = 147

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 392 CCLETEAIVNKFLCYDFIIHIWNLRHGFVHFEH 294
           C  +T  +  +FL  DF+I + NL   F+  EH
Sbjct: 93  CAADTHQVPEEFL--DFVIPVTNLTDAFMRIEH 123


>Z66511-1|CAA91314.1|  537|Caenorhabditis elegans Hypothetical
           protein F07A11.1 protein.
          Length = 537

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 30  YGLLCCGQFMAEDYYYDIVTRDPDDLMREKENEVRALRAFQ 152
           YG   C Q  AED Y D + R  ++  R+ E  ++  + ++
Sbjct: 184 YGNEICAQCQAEDAYMDRMRRQAEEERRKYEETMKRAKMYE 224


>U23523-1|AAC46560.2|  305|Caenorhabditis elegans Hypothetical
           protein F53A9.5 protein.
          Length = 305

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -2

Query: 422 NVVPCGVVWRCCLETEAIVNKFLCYDFIIH--IW 327
           N+  CG VW C   T   V++FL  ++ +H  IW
Sbjct: 132 NIAQCGSVWTCVAVT---VDRFLAVNYPLHSKIW 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,208,038
Number of Sequences: 27780
Number of extensions: 334192
Number of successful extensions: 821
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)