Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1026
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g16030.1 68415.m01838 expressed protein 31 1.1
At1g56660.1 68414.m06516 expressed protein 29 2.5
At1g15470.1 68414.m01860 transducin family protein / WD-40 repea... 29 2.5
At5g03330.2 68418.m00285 OTU-like cysteine protease family prote... 29 4.4
At5g03330.1 68418.m00284 OTU-like cysteine protease family prote... 29 4.4
At1g47740.2 68414.m05309 expressed protein 29 4.4
At1g47740.1 68414.m05308 expressed protein 29 4.4
At5g44710.1 68418.m05478 expressed protein similar to unknown pr... 28 7.6
At3g06100.1 68416.m00700 major intrinsic family protein / MIP fa... 28 7.6
>At2g16030.1 68415.m01838 expressed protein
Length = 231
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = -3
Query: 337 FIS-GILDMASFILNTPCAVMSPSFISTQRAHFLRDTSSVCQSPLFKLTTKSGLTWTSSA 161
F+S G + M IL TP +SP S HF R T L K+ W+S A
Sbjct: 16 FLSIGTVLMVIMILQTPKTCISPEAPSKPHTHFPRSTCDSSPRQHLPLPKKNARIWSSGA 75
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 93 DPDDLMREKENEVRALRAFQADCAEDVQVKPDLVVNLKSGDWQTEDVSLK 242
+ D M+EK+++ + CAE+ + KPD K + ED LK
Sbjct: 237 ETDQEMKEKDSKKNKKKEKDESCAEEKKKKPDKEKKEKDESTEKEDKKLK 286
>At1g15470.1 68414.m01860 transducin family protein / WD-40 repeat
family protein Strong similarity to gb AF096285
serine-threonine kinase receptor-associated protein from
Mus musculus and contains 5 PF|00400 WD40, G-beta repeat
domains. EST gb|F14050 comes from this gene
Length = 333
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = -2
Query: 407 GVVWRCCLETEAIVNKFLCYDFIIHIWNLRHG-FVH-FEH 294
G VW C L+ AI DF IWN G +H FEH
Sbjct: 57 GAVWSCSLDKNAIRAASASADFTAKIWNALTGDELHSFEH 96
>At5g03330.2 68418.m00285 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 356
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 336 NDKIIAEKLIDDCLSLQATTPHD-AAWNYIKCHHQKDPEGNFSSLN 470
ND+IIA L DD L L+ +D + N + H Q+ N+S+ N
Sbjct: 64 NDEIIARTLQDDFLQLEIAESNDYSHQNQQQQHQQEGYTNNYSNNN 109
>At5g03330.1 68418.m00284 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 356
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 336 NDKIIAEKLIDDCLSLQATTPHD-AAWNYIKCHHQKDPEGNFSSLN 470
ND+IIA L DD L L+ +D + N + H Q+ N+S+ N
Sbjct: 64 NDEIIARTLQDDFLQLEIAESNDYSHQNQQQQHQQEGYTNNYSNNN 109
>At1g47740.2 68414.m05309 expressed protein
Length = 279
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 45 CGQFMAEDYYYDIVTRDPDDLMREKENEVRALRAFQADCAEDVQVK 182
C + E V DPD + E+ENE R+LR+ C + ++
Sbjct: 198 CSCILPESLKITAVCHDPDGQIPEEENEKRSLRS-SFSCLSSISMR 242
>At1g47740.1 68414.m05308 expressed protein
Length = 279
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 45 CGQFMAEDYYYDIVTRDPDDLMREKENEVRALRAFQADCAEDVQVK 182
C + E V DPD + E+ENE R+LR+ C + ++
Sbjct: 198 CSCILPESLKITAVCHDPDGQIPEEENEKRSLRS-SFSCLSSISMR 242
>At5g44710.1 68418.m05478 expressed protein similar to unknown
protein (ref|NP_011731.1)
Length = 102
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 48 GQFMAEDYYYDIVTRDPDDLMREKENEVRAL 140
G +AE Y YDI DP+ L RE++ + L
Sbjct: 48 GDKVAEWYPYDIKNEDPNVLAREEKERISKL 78
>At3g06100.1 68416.m00700 major intrinsic family protein / MIP
family protein contains Pfam profile: PF00230 major
intrinsic protein; contains non-consensus TT acceptor
splice site at exon 4
Length = 275
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -3
Query: 394 VVAWRLRQSSISFSAMILSFISGILDMASFILNT-PC-AVMSPSFISTQR 251
VVAW I +A ++ I G+L S L T PC + +SPS S R
Sbjct: 226 VVAWDFEDLWIYMTAPVIGAIIGVLTYRSISLKTRPCPSPVSPSVSSLLR 275
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,121,140
Number of Sequences: 28952
Number of extensions: 302295
Number of successful extensions: 660
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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