Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1023
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57490.1 68418.m07184 porin, putative similar to 36kDA porin ...    62   3e-10
At3g01280.1 68416.m00035 porin, putative similar to SP|P42055 34...    62   3e-10
At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34...    53   2e-07
At3g49920.1 68416.m05458 porin, putative similar to SP|P42055 34...    32   0.42 
At5g20140.1 68418.m02397 SOUL heme-binding family protein contai...    31   0.97 
At2g36340.1 68415.m04460 DNA-binding storekeeper protein-related...    29   2.2  
At3g13610.1 68416.m01713 oxidoreductase, 2OG-Fe(II) oxygenase fa...    29   3.0  
At4g30810.1 68417.m04365 serine carboxypeptidase S10 family prot...    28   6.8  
At4g25920.1 68417.m03727 expressed protein contains Pfam profile...    27   9.0  
At3g17365.1 68416.m02219 expressed protein low similarity to PIR...    27   9.0  
At2g04740.1 68415.m00484 ankyrin repeat family protein contains ...    27   9.0  

>At5g57490.1 68418.m07184 porin, putative similar to 36kDA porin II
           [Solanum tuberosum] GI:515360; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 274

 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 43/173 (24%), Positives = 86/173 (49%)
 Frame = +3

Query: 75  APPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKF 254
           +P  +AD+GKKA D+ +K Y F   K  L   S +G EF +  T  ++    FG +S+ +
Sbjct: 4   SPAPFADIGKKAKDLLNKDYIFD-HKFTLTMLSATGTEFVA--TGLKKDDFFFGDISTLY 60

Query: 255 AVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDT 434
             K        K ++ ++++T +T+++ + +  K  +          K+GKL   + +  
Sbjct: 61  --KGQNTIVDLKIDSHSSVSTKVTLKNLLPSA-KAVISFKIPDH---KSGKLDVQYVHPH 114

Query: 435 VAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQS 593
             +N+++ L+   P++D++A +  Q    G    FDT  +  +K N  +G+ +
Sbjct: 115 ATLNSSIGLN-PTPLLDLSATIGSQNVCLGGEVSFDTASSSLTKYNAGIGFNN 166


>At3g01280.1 68416.m00035 porin, putative similar to SP|P42055 34
           kDa outer mitochondrial membrane protein porin
           (Voltage-dependent anion-selective channel protein)
           (VDAC) {Solanum tuberosum}; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 276

 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 50/199 (25%), Positives = 87/199 (43%)
 Frame = +3

Query: 78  PPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKFA 257
           P  Y ++GKKA D+  K  H    K  + T S +GV  TS  T  ++   + G ++  F 
Sbjct: 5   PGLYTEIGKKARDLLYKD-HNSDQKFSITTFSPAGVAITS--TGTKKGDLLLGDVA--FQ 59

Query: 258 VKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTV 437
            +   +T   K  TD+T     T+ D+ A GL+         Q    +GK++  + ++  
Sbjct: 60  SRRKNITTDLKVCTDSTFLITATV-DEAAPGLRSIFSFKVPDQN---SGKVELQYLHEYA 115

Query: 438 AVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTN 617
            ++T++ L    P V+ + V+       G    FDT+   F+K N  L +   D      
Sbjct: 116 GISTSMGLT-QNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLT 174

Query: 618 VDNGKDFGGSIYXKVSDKL 674
           V++  D   + Y  + + L
Sbjct: 175 VNDKGDLLNASYYHIVNPL 193


>At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34
           kDa outer mitochondrial membrane protein porin
           (Voltage-dependent anion-selective channel protein)
           (VDAC) {Solanum tuberosum}; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 276

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 45/177 (25%), Positives = 79/177 (44%)
 Frame = +3

Query: 78  PPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKFA 257
           P  + D+GKKA D+ ++ Y+    K  + T S SGV  TS  T+ ++ G     +++++ 
Sbjct: 5   PGLFTDIGKKAKDLLTRDYNSDQ-KFSISTYSASGVALTS--TALKKGGVHAADVATQYK 61

Query: 258 VKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTV 437
            K+    F  K +TD+++ T +T+ + I    K  +     P     + KL+  + +D  
Sbjct: 62  YKN--ALFDVKIDTDSSVLTTVTLTE-ILPSTK-AIASFKVPD--YNSAKLEVQYFHDHA 115

Query: 438 AVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFAL 608
            V     L    P++D+ A L       G    +DT    F+K N  +     D  L
Sbjct: 116 TVTAAAALK-QNPLIDITATLGSPVISFGAEAGYDTTSKTFTKYNAGISVTKPDACL 171


>At3g49920.1 68416.m05458 porin, putative similar to SP|P42055 34
           kDa outer mitochondrial membrane protein porin
           (Voltage-dependent anion-selective channel protein)
           (VDAC) {Solanum tuberosum}; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 226

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 78  PPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSN 212
           P  +AD+GK A D+ ++ Y     K  + T S SGV  TS    N
Sbjct: 5   PGLFADIGKYAKDLLTRDYSTDQ-KFSISTNSVSGVALTSTALKN 48


>At5g20140.1 68418.m02397 SOUL heme-binding family protein contains
           PFam profile PF04832: SOUL heme-binding protein
          Length = 378

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
 Frame = +3

Query: 54  IYKTQDMAPPYYADLGKKAN-DVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKV 230
           IYKT D+  P Y  L + AN +V +      V  +  K    SG         N  +G +
Sbjct: 199 IYKTPDLETPKYQILKRTANYEVRNYEPFIVVETIGDKLSGSSGF--------NNVAGYI 250

Query: 231 FGSLSSKFAVKDYGLTFTEKWNTDNTLATDITIQDKIAAG 350
           FG  S+   +      FT+   TD  L++D+++Q  I +G
Sbjct: 251 FGKNSTMEKIPMTTPVFTQ--TTDTQLSSDVSVQIVIPSG 288


>At2g36340.1 68415.m04460 DNA-binding storekeeper protein-related
           contains similarity to storekeeper protein [Solanum
           tuberosum] gi|14268476|emb|CAC39398; contains PF04504:
           Protein of unknown function, DUF573
          Length = 414

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
 Frame = +3

Query: 294 NTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAG 473
           N+D+TL  +  ++ +     +  L  T    T T+T  L  S +   +  + N +L + G
Sbjct: 14  NSDDTLTRNREVEVEAMLSRRKQLRTTTTRTTTTRTTPLSLSSSASKMNWSKNDELVILG 73

Query: 474 PVVDV--AAVLNYQG-WLAGVHTQFDTQKAKFSK 566
            +VD      L+Y+  W A      D  +AKFSK
Sbjct: 74  GIVDYENETKLSYRSDWDALYRYIKDCVEAKFSK 107


>At3g13610.1 68416.m01713 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to desacetoxyvindoline
           4-hydroxylase [Catharanthus roseus][GI:1916643],
           flavonol synthase 1 [SP|Q96330]; contains PF03171
           2OG-Fe(II) oxygenase superfamily domain
          Length = 361

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -1

Query: 349 PAAILSWIVMSVANVLSVFHFSVKVKP*SFTANLEERLPKTFPLSWLEVIPLVN-STPD 176
           PA +  ++V     V  +    +K  P  +   LEERL   F     E IP+++ S PD
Sbjct: 13  PAEVTDFVVYKGNGVKGLSETGIKALPEQYIQPLEERLINKFVNETDEAIPVIDMSNPD 71


>At4g30810.1 68417.m04365 serine carboxypeptidase S10 family protein
           similar to serine-type carboxypeptidase (SP:P55748)
           [Hordeum vulgare]
          Length = 479

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 278 SQAIVFHCKFGGKAAKNLSAFLVGGDSAGEFNTRLAL 168
           S+AIV H +   K + NL  ++VG     +F+ RL L
Sbjct: 196 SEAIVKHNQGSDKNSINLKGYMVGNGLMDDFHDRLGL 232


>At4g25920.1 68417.m03727 expressed protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 390

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 81  PYYADLGKKANDVFSKGYHFGVFKLDLKT 167
           P  +  G K N ++  GY+FGV+ L  KT
Sbjct: 330 PASSSPGLKPNCIYFVGYNFGVYDLTTKT 358


>At3g17365.1 68416.m02219 expressed protein low similarity to
           PIR|I46078 endothelin converting enzyme from Bos
           primigenius taurus
          Length = 239

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -2

Query: 609 GEQSHQIGNLEQSCSWRTLLFVYQTGCVHQPANPGSLVLLQRLQLD 472
           G   +++   ++SCSW T L V       QP +     L + L LD
Sbjct: 159 GAPIYRLRLFKESCSWTTKLHVIDKSLTDQPLDTPKWELTKPLPLD 204


>At2g04740.1 68415.m00484 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 578

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 406 FPVLVPVCGAKVPSRVTLRPAAILSWIVMS-VANVLSVFHFSVKVKP*SFTANLE 245
           FP+   V  A +P   T  PA +  W+V+S +  VL +  + + +   +F A +E
Sbjct: 431 FPLKRAVADALLPHLETATPAELCQWLVLSDMYGVLKIREYCLDLVACNFEAFVE 485


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,957,510
Number of Sequences: 28952
Number of extensions: 309515
Number of successful extensions: 921
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)