Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1022
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    25   0.79 
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      24   1.0  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   2.4  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    22   5.5  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    22   5.5  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   7.3  

>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 384 QPLKLM-ERDTTVYRAEYFNQSDWKNGKRGYHR 479
           +P++++ +  + +Y  EY N   W+N +  Y R
Sbjct: 313 KPIRILFDVSSEIYNVEYKNVEFWRNIREDYDR 345


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -1

Query: 334 NTYVASYGRCNSPSKIAFNEAGPHRNLSSEVSCGVASRACQP 209
           ++  A YG C S         G  RNLSS +  G   +A  P
Sbjct: 101 SSQAAKYGGCFSGESTVLTSTGLRRNLSS-LQIGEKIQALDP 141


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/39 (20%), Positives = 21/39 (53%)
 Frame = +3

Query: 333 FAQVNADKILWKYSGEIQPLKLMERDTTVYRAEYFNQSD 449
           F +    K++W+  G+ QP ++ ++    ++A  ++  D
Sbjct: 276 FFEEKNGKVVWEGFGDFQPSQVHKQTAICFKAPRYHTLD 314


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = -1

Query: 217 CQPPYWGPRSGRSIHTSFQTW*LHTESRVN 128
           C P     R GR  +T FQT  L  E   N
Sbjct: 150 CGPNGCPRRRGRQTYTRFQTLELEKEFHFN 179


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = -1

Query: 217 CQPPYWGPRSGRSIHTSFQTW*LHTESRVN 128
           C P     R GR  +T FQT  L  E   N
Sbjct: 209 CGPNGCPRRRGRQTYTRFQTLELEKEFHFN 238


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -2

Query: 687 SDRRXRFFIXQXHTXSPVRS*MSSLRSKLEGHVIEG 580
           SDRR   F+      +P    M+      EG+ +EG
Sbjct: 570 SDRRLELFLELLPMLAPGAPVMTRYLGDFEGNQVEG 605


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,076
Number of Sequences: 336
Number of extensions: 3592
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)