Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1022
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    28   1.5  
SPCC330.10 |pcm1||mRNA capping methyltransferase|Schizosaccharom...    27   3.4  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    26   4.5  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    25   7.9  

>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +3

Query: 225 DATPQETSEDKFRCGPASLKAILDGELQRPYDATYVFAQVNADKIL 362
           DA      ED   CG   +  IL GE    YD  +++A  N D ++
Sbjct: 289 DANADSKKEDSSPCG--YIIRILSGEQTVKYDREFLYAHNNTDMLI 332


>SPCC330.10 |pcm1||mRNA capping
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 389

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 423 RAEYFNQSDWKNGKRGYHRH 482
           R +YF  +D  +G+RGY+RH
Sbjct: 66  RRDYFQNND-NSGRRGYNRH 84


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 382 ISPEYFHKILSAFTCANTYVASYGRCNSPSKIAFNEAGPHRNLS 251
           +SP  F  I+  F   NTY + Y + +S   IAF   G H +L+
Sbjct: 348 VSPSSFKFIIGEF---NTYFSGYRQQDSQEFIAFFLDGLHEDLN 388


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 411 TTVYRAEYFNQSDWKNGKRGYH-RHIQIPGTNARRENDNGKSVAQXREHLR 560
           T + + +Y   SD K+ +R +  RH +     +R  +DN +  +  REH R
Sbjct: 152 TLMEKRKYSLDSDRKSKERRHRDRHHRSNQDRSRERSDNEQHSSDKREHSR 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,795,208
Number of Sequences: 5004
Number of extensions: 58429
Number of successful extensions: 155
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)