Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1022
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0121 - 1493822-1494316                                           29   3.5  
07_03_1109 - 24044583-24045218                                         29   3.5  
02_05_0947 + 32999767-33000300,33000363-33001519,33001618-33002113     29   3.5  
02_04_0637 - 24651198-24651941                                         28   6.2  
03_06_0708 - 35667547-35667578,35667741-35667794,35667828-35668995     28   8.2  
03_02_0715 + 10621789-10623243,10624074-10625018                       28   8.2  
01_06_1007 - 33733500-33733604,33733837-33733917,33734191-337342...    28   8.2  

>10_01_0121 - 1493822-1494316
          Length = 164

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
 Frame = +1

Query: 40  GNWLRCXSRQSRKPHD*HNHGRGKETRWTNSLETPYGATTFGMKYGWSG-QIWAPNTEAG 216
           G W+R   R+ R+      HGR +  RW +      G    GM+ G SG   + P  ++G
Sbjct: 28  GWWIRLWERRGRQIRPLEGHGRQRLWRWCS------GGRQGGMQRGRSGASSFLPTGDSG 81

Query: 217 K--LWMLXHKKLQKTNS 261
           K   W   H+     N+
Sbjct: 82  KGEGWRWGHRLCPAPNT 98


>07_03_1109 - 24044583-24045218
          Length = 211

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 210 GWQALDATPQETSEDKFRCGPASLKAILDGELQRPYDA 323
           GW+A   +P++ +  K    P +  A+ DG+  RP DA
Sbjct: 71  GWRACAPSPRDPTLRKHLLRPRAWVALCDGDAARPDDA 108


>02_05_0947 + 32999767-33000300,33000363-33001519,33001618-33002113
          Length = 728

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -2

Query: 312 AAAIPRLKLLSTKPARTG-ICLLKFLVX*HPELASLRIGGPDLAAPSIL 169
           AAA+  L+ ++  P   G I     ++   P +AS    GP LAAP IL
Sbjct: 443 AAALEILRYMARTPYPVGKILFFGTVLSSSPRIASFSARGPSLAAPEIL 491


>02_04_0637 - 24651198-24651941
          Length = 247

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 177 MERPDLGPQYGGWQALDATPQETSED 254
           ++ P L P YGG+ +   +P ET +D
Sbjct: 221 VQEPSLEPGYGGYSSQPESPPETGDD 246


>03_06_0708 - 35667547-35667578,35667741-35667794,35667828-35668995
          Length = 417

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -1

Query: 355 LSAFTCANTYVASYGRCNSP--SKIAFNEAGPHRN 257
           LS+   A+  VASYG C SP  ++  F+E  PHRN
Sbjct: 84  LSSPFFASALVASYGACASPALARRLFDEL-PHRN 117


>03_02_0715 + 10621789-10623243,10624074-10625018
          Length = 799

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +1

Query: 10  CRALGNSLEAGNWLRCXSRQSRKPHD*HNHGRG 108
           C  LG  +  GNW     R   + H  HNH  G
Sbjct: 532 CVGLGREVPEGNWYCGGCRLDGEAHSYHNHVNG 564


>01_06_1007 -
           33733500-33733604,33733837-33733917,33734191-33734238,
           33734364-33734549,33735148-33735678,33735823-33735864,
           33735945-33736065,33736200-33736281,33737169-33737227,
           33738492-33738564,33738694-33738913
          Length = 515

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 453 KNGKRGYHRHIQIPGTNARRENDNGKSVAQXREHLRS 563
           KNG R   RH  + G+N R     G  VA+  +HLR+
Sbjct: 335 KNGTRSQTRHGSVGGSNGRMA--KGGRVAKLVDHLRT 369


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,373,287
Number of Sequences: 37544
Number of extensions: 394598
Number of successful extensions: 978
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)