Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1022
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42288| Best HMM Match : Transglut_N (HMM E-Value=9.2e-34) 53 3e-07
SB_57180| Best HMM Match : Transglut_core (HMM E-Value=1.4e-14) 37 0.014
SB_14436| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_4831| Best HMM Match : E-MAP-115 (HMM E-Value=1.8) 30 2.1
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_54151| Best HMM Match : PAN (HMM E-Value=0.00084) 28 6.3
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 28 6.3
SB_48851| Best HMM Match : zf-C2H2 (HMM E-Value=3.2e-13) 28 8.4
SB_22741| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_22739| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_4494| Best HMM Match : zf-C2H2 (HMM E-Value=2.2e-09) 28 8.4
>SB_42288| Best HMM Match : Transglut_N (HMM E-Value=9.2e-34)
Length = 686
Score = 52.8 bits (121), Expect = 3e-07
Identities = 19/36 (52%), Positives = 27/36 (75%)
Frame = +3
Query: 258 FRCGPASLKAILDGELQRPYDATYVFAQVNADKILW 365
FRCGP +KA+ +GE+ PYD +VFA+VN D++ W
Sbjct: 435 FRCGPCPVKAVKNGEVYVPYDTKFVFAEVNGDRVYW 470
Score = 46.0 bits (104), Expect = 3e-05
Identities = 26/67 (38%), Positives = 32/67 (47%)
Frame = +1
Query: 400 WSVTPXSIGQNISTKAIGRMEREDITDTYKYPXXXXXXXXXXXKALRKXENIFARYYLND 579
+ + SIG+NISTKA+G EREDIT YK+P A + Y
Sbjct: 481 YRIDKQSIGKNISTKAVGSDEREDITHLYKFPEGSHAEREAVHLAHKYSSRRDEDIYEEK 540
Query: 580 AFNDVTF 600
NDVTF
Sbjct: 541 RVNDVTF 547
Score = 31.5 bits (68), Expect = 0.68
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 26 IPWRPVTGYDAXHDSQGSLTIDIIMDE 106
IP R VT + + HD+ S+TID DE
Sbjct: 348 IPTRSVTNFKSAHDTDSSMTIDFHFDE 374
>SB_57180| Best HMM Match : Transglut_core (HMM E-Value=1.4e-14)
Length = 422
Score = 37.1 bits (82), Expect = 0.014
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +2
Query: 26 IPWRPVTGYDAXHDSQGSLTIDIIMDE 106
IP R VT +D+ HD+ GSLTID DE
Sbjct: 314 IPTRSVTNFDSAHDTDGSLTIDTHFDE 340
Score = 35.9 bits (79), Expect = 0.032
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +3
Query: 258 FRCGPASLKAILDGELQRPYDATYVFAQ 341
FRCGP L A+ +G++ P+D +VFA+
Sbjct: 395 FRCGPCPLTAVKNGDVHIPHDTGFVFAE 422
>SB_14436| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 765
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +3
Query: 255 KFRCGPASLKAILDGELQRPYDATYVFAQVNADKILWKYSG--EIQPLKLMERDTTVY 422
KF P+S + G+L + TYV N D++++ Y G + L++ R T++
Sbjct: 542 KFTSFPSSPVTVEYGKLNHKLEWTYVVGGRNLDELIYFYKGSTRVGSLRISSRQVTMF 599
>SB_4831| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
Length = 1151
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 408 DTTVYRAEYFNQSDWKNGKRGYHRHIQIPGTNARRENDNGKS 533
D T+ N SD +N +R HR Q P + RR+N+ S
Sbjct: 227 DATLASPNQSNDSDKENKERCKHRDKQAPSVSNRRKNEKESS 268
>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3051
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 136 ETPYGATTFGMKYGWSGQIWAPNTEAGKL 222
E P T++ +++ +G+IWA TE+G L
Sbjct: 603 ERPLWVTSYTLEFSNNGRIWADYTESGHL 631
>SB_54151| Best HMM Match : PAN (HMM E-Value=0.00084)
Length = 326
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +3
Query: 378 EIQPLKLMERDTTVYRAEYFNQSDWKNGKRGYHRHIQIPGTNA 506
E QPLKL RD +VY ++ DWK R +H++ NA
Sbjct: 82 ERQPLKLARRDLSVYLSDR-KAGDWKGVVRSC-KHLRDLAPNA 122
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = -1
Query: 358 ILSAFTCANT-YVASYGRCNSPSKIAFNEAGPHRNLSSEVSCGVASRACQPPYWGPRSGR 182
+LS +CA++ + G+C S + + H S E S AS C+P ++ +GR
Sbjct: 2162 VLSNASCASSEFACESGQCVRKSFVCDGDNDCHDG-SDESSLVCASWTCEPGHFSCNNGR 2220
Query: 181 SIHTSF 164
I+ +
Sbjct: 2221 CINAKW 2226
>SB_48851| Best HMM Match : zf-C2H2 (HMM E-Value=3.2e-13)
Length = 169
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +3
Query: 351 DKILWKYSGEIQPLKLMERDTTVYRAEYFNQS-DWKNGKRGYH 476
+K L +SGE +PL+ +ER + YR++Y Q GK+ +H
Sbjct: 99 NKHLKIHSGE-KPLQCVERGKSFYRSDYLKQHVKIHTGKKPHH 140
>SB_22741| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 363
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +3
Query: 378 EIQPLKLMERDTTVYRAEYFNQSDWKNGKRGYHRHIQIPGTNA 506
E QPLKL RD +VY ++ DWK R +H++ NA
Sbjct: 84 ERQPLKLARRDLSVYLSDR-KAGDWKGVVRSC-KHLRDLAGNA 124
>SB_22739| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +3
Query: 378 EIQPLKLMERDTTVYRAEYFNQSDWKNGKRGYHRHIQIPGTNA 506
E QPLKL RD +VY ++ DWK R +H++ NA
Sbjct: 84 ERQPLKLARRDLSVYLSDR-KAGDWKGVVRSC-KHLRDLAGNA 124
>SB_4494| Best HMM Match : zf-C2H2 (HMM E-Value=2.2e-09)
Length = 164
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +3
Query: 351 DKILWKYSGEIQPLKLMERDTTVYRAEYFNQS-DWKNGKRGYH 476
+K L +SGE +PL+ +ER + YR++Y Q GK+ +H
Sbjct: 64 NKHLKIHSGE-KPLQCVERGKSFYRSDYLKQHVKIHTGKKPHH 105
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,903,552
Number of Sequences: 59808
Number of extensions: 440233
Number of successful extensions: 1250
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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