Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1022
         (700 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT010024-1|AAQ22493.1|  776|Drosophila melanogaster RE08173p pro...   138   7e-33
AE014134-1380|AAN10650.1|  768|Drosophila melanogaster CG7356-PB...   138   7e-33
AE014134-1379|AAF52590.2|  776|Drosophila melanogaster CG7356-PA...   138   7e-33
AY060329-1|AAL25368.1|  654|Drosophila melanogaster GH21837p pro...    29   6.1  
AE013599-922|AAF58902.2|  654|Drosophila melanogaster CG1698-PA ...    29   6.1  
AF237761-2|AAF81411.1|  908|Drosophila melanogaster unknown prot...    29   8.0  

>BT010024-1|AAQ22493.1|  776|Drosophila melanogaster RE08173p
           protein.
          Length = 776

 Score =  138 bits (334), Expect = 7e-33
 Identities = 56/102 (54%), Positives = 79/102 (77%), Gaps = 4/102 (3%)
 Frame = +3

Query: 120 MDEFTRDSVWSYHVWNEVWMERPDLGP----QYGGWQALDATPQETSEDKFRCGPASLKA 287
           +D  T DS+W+YHVWNE+WM+RPDLG      + GWQ +DATPQE S++ +R GPAS+ A
Sbjct: 377 LDAETTDSIWNYHVWNELWMQRPDLGVGEHGTFDGWQVVDATPQEASDNMYRVGPASVAA 436

Query: 288 ILDGELQRPYDATYVFAQVNADKILWKYSGEIQPLKLMERDT 413
           + +G++ RP+D  +VFA+VNADK+ W+Y+G  QPLKL+ +DT
Sbjct: 437 VKNGDILRPFDGGFVFAEVNADKLYWRYNGPSQPLKLLRKDT 478



 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 31/62 (50%), Positives = 41/62 (66%)
 Frame = +1

Query: 418 SIGQNISTKAIGRMEREDITDTYKYPXXXXXXXXXXXKALRKXENIFARYYLNDAFNDVT 597
           +IG  ISTKA+ + EREDITDTYK+            KAL++  + F+RYYLND FND+ 
Sbjct: 480 AIGHLISTKAVLKWEREDITDTYKHAERSEEERSTMLKALKQSRHAFSRYYLNDNFNDIE 539

Query: 598 FE 603
           F+
Sbjct: 540 FD 541



 Score = 35.1 bits (77), Expect = 0.092
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +2

Query: 26  IPWRPVTGYDAXHDSQGSLTIDIIMDEXRK 115
           IP R +T Y + HD+Q SLT+D+ +D   K
Sbjct: 346 IPSRIITCYSSAHDTQASLTVDVFIDANNK 375


>AE014134-1380|AAN10650.1|  768|Drosophila melanogaster CG7356-PB,
           isoform B protein.
          Length = 768

 Score =  138 bits (334), Expect = 7e-33
 Identities = 56/102 (54%), Positives = 79/102 (77%), Gaps = 4/102 (3%)
 Frame = +3

Query: 120 MDEFTRDSVWSYHVWNEVWMERPDLGP----QYGGWQALDATPQETSEDKFRCGPASLKA 287
           +D  T DS+W+YHVWNE+WM+RPDLG      + GWQ +DATPQE S++ +R GPAS+ A
Sbjct: 369 LDAETTDSIWNYHVWNELWMQRPDLGVGEHGTFDGWQVVDATPQEASDNMYRVGPASVAA 428

Query: 288 ILDGELQRPYDATYVFAQVNADKILWKYSGEIQPLKLMERDT 413
           + +G++ RP+D  +VFA+VNADK+ W+Y+G  QPLKL+ +DT
Sbjct: 429 VKNGDILRPFDGGFVFAEVNADKLYWRYNGPSQPLKLLRKDT 470



 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 31/62 (50%), Positives = 41/62 (66%)
 Frame = +1

Query: 418 SIGQNISTKAIGRMEREDITDTYKYPXXXXXXXXXXXKALRKXENIFARYYLNDAFNDVT 597
           +IG  ISTKA+ + EREDITDTYK+            KAL++  + F+RYYLND FND+ 
Sbjct: 472 AIGHLISTKAVLKWEREDITDTYKHAERSEEERSTMLKALKQSRHAFSRYYLNDNFNDIE 531

Query: 598 FE 603
           F+
Sbjct: 532 FD 533



 Score = 35.1 bits (77), Expect = 0.092
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +2

Query: 26  IPWRPVTGYDAXHDSQGSLTIDIIMDEXRK 115
           IP R +T Y + HD+Q SLT+D+ +D   K
Sbjct: 338 IPSRIITCYSSAHDTQASLTVDVFIDANNK 367


>AE014134-1379|AAF52590.2|  776|Drosophila melanogaster CG7356-PA,
           isoform A protein.
          Length = 776

 Score =  138 bits (334), Expect = 7e-33
 Identities = 56/102 (54%), Positives = 79/102 (77%), Gaps = 4/102 (3%)
 Frame = +3

Query: 120 MDEFTRDSVWSYHVWNEVWMERPDLGP----QYGGWQALDATPQETSEDKFRCGPASLKA 287
           +D  T DS+W+YHVWNE+WM+RPDLG      + GWQ +DATPQE S++ +R GPAS+ A
Sbjct: 377 LDAETTDSIWNYHVWNELWMQRPDLGVGEHGTFDGWQVVDATPQEASDNMYRVGPASVAA 436

Query: 288 ILDGELQRPYDATYVFAQVNADKILWKYSGEIQPLKLMERDT 413
           + +G++ RP+D  +VFA+VNADK+ W+Y+G  QPLKL+ +DT
Sbjct: 437 VKNGDILRPFDGGFVFAEVNADKLYWRYNGPSQPLKLLRKDT 478



 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 31/62 (50%), Positives = 41/62 (66%)
 Frame = +1

Query: 418 SIGQNISTKAIGRMEREDITDTYKYPXXXXXXXXXXXKALRKXENIFARYYLNDAFNDVT 597
           +IG  ISTKA+ + EREDITDTYK+            KAL++  + F+RYYLND FND+ 
Sbjct: 480 AIGHLISTKAVLKWEREDITDTYKHAERSEEERSTMLKALKQSRHAFSRYYLNDNFNDIE 539

Query: 598 FE 603
           F+
Sbjct: 540 FD 541



 Score = 35.1 bits (77), Expect = 0.092
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +2

Query: 26  IPWRPVTGYDAXHDSQGSLTIDIIMDEXRK 115
           IP R +T Y + HD+Q SLT+D+ +D   K
Sbjct: 346 IPSRIITCYSSAHDTQASLTVDVFIDANNK 375


>AY060329-1|AAL25368.1|  654|Drosophila melanogaster GH21837p
           protein.
          Length = 654

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 498 FRVFVCVGDILSFHSSNRFG*NILPD 421
           F + +C G+I+ + S NRFG NI  D
Sbjct: 332 FSLAICFGNIIMYASYNRFGHNIYRD 357


>AE013599-922|AAF58902.2|  654|Drosophila melanogaster CG1698-PA
           protein.
          Length = 654

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 498 FRVFVCVGDILSFHSSNRFG*NILPD 421
           F + +C G+I+ + S NRFG NI  D
Sbjct: 332 FSLAICFGNIIMYASYNRFGHNIYRD 357


>AF237761-2|AAF81411.1|  908|Drosophila melanogaster unknown
           protein.
          Length = 908

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +2

Query: 80  LTIDIIMDEXRKHDGRIHSRLRMELPRLE*SMDGAARSGPPIRRL 214
           L +  + DE  KH  R H RL     RL  +++   RS PP RRL
Sbjct: 848 LKLATVFDEINKHSSRYHDRLERHRNRLASALN---RSRPP-RRL 888


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,112,121
Number of Sequences: 53049
Number of extensions: 641434
Number of successful extensions: 1533
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1530
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)