Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1022
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    25   0.91 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.5  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 216 ASLRIGGPDLAAPSILHS-KRGSSI 145
           A LR  GP    P +LH+ +RG+SI
Sbjct: 426 AGLRYRGPKQNKPKVLHAIRRGASI 450


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/28 (28%), Positives = 12/28 (42%)
 Frame = +3

Query: 96  SWTRXGNTMDEFTRDSVWSYHVWNEVWM 179
           SW       DE   D+ WS +    +W+
Sbjct: 390 SWEEGMKVFDELLLDADWSVNAGMWMWL 417


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/31 (22%), Positives = 17/31 (54%)
 Frame = +3

Query: 333 FAQVNADKILWKYSGEIQPLKLMERDTTVYR 425
           F +    ++LW+  G+ QP+ + ++    +R
Sbjct: 257 FFEEKDGQVLWEGFGDFQPVHVHKQTAIAFR 287


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/31 (22%), Positives = 17/31 (54%)
 Frame = +3

Query: 333 FAQVNADKILWKYSGEIQPLKLMERDTTVYR 425
           F +    ++LW+  G+ QP+ + ++    +R
Sbjct: 257 FFEEKDGQVLWEGFGDFQPVHVHKQTAIAFR 287


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,544
Number of Sequences: 438
Number of extensions: 4016
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)