Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1021
         (500 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6EVY7 Cluster: Protein ycf2; n=36; Magnoliophyta|Rep: ...    34   1.6  
UniRef50_Q96DT5 Cluster: Ciliary dynein heavy chain 11; n=104; E...    33   2.7  
UniRef50_Q4HH57 Cluster: Putative uncharacterized protein; n=1; ...    33   4.8  
UniRef50_Q04UH8 Cluster: Sulfatase; n=4; Leptospira|Rep: Sulfata...    33   4.8  
UniRef50_A7QZ68 Cluster: Chromosome undetermined scaffold_265, w...    33   4.8  
UniRef50_Q5CYV2 Cluster: Putative uncharacterized protein; n=2; ...    32   8.3  

>UniRef50_Q6EVY7 Cluster: Protein ycf2; n=36; Magnoliophyta|Rep:
           Protein ycf2 - Nymphaea alba (White water-lily)
          Length = 2253

 Score = 34.3 bits (75), Expect = 1.6
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 298 HSLVYCIFVTREIIYEIRKSLF--DLANVFDSVIIFSYVF 411
           H    CIF  REI+ EI+ S +  D    FDSV+ F+++F
Sbjct: 4   HQFKSCIFELREILREIKNSRYFLDSWTKFDSVVSFTHIF 43


>UniRef50_Q96DT5 Cluster: Ciliary dynein heavy chain 11; n=104;
            Eukaryota|Rep: Ciliary dynein heavy chain 11 - Homo
            sapiens (Human)
          Length = 4523

 Score = 33.5 bits (73), Expect = 2.7
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +1

Query: 253  VLLTGP*MCFVLISFHSLVYCIFVTREIIYEIRKSLFDLANVFDSVIIFS 402
            +L +GP +    I+FH  + C F+   I +    +L DL+NVF  ++  S
Sbjct: 2682 ILRSGPTLIQATIAFHQTMMCNFLPTAIKFHYIFNLRDLSNVFQGILFAS 2731


>UniRef50_Q4HH57 Cluster: Putative uncharacterized protein; n=1;
           Campylobacter coli RM2228|Rep: Putative uncharacterized
           protein - Campylobacter coli RM2228
          Length = 41

 Score = 32.7 bits (71), Expect = 4.8
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = +1

Query: 376 VFDSVIIFSYVFIMLGRLKCVFVYII 453
           +FD  I+FSY+F  +G+++C F+ I+
Sbjct: 1   MFDFKILFSYIFFTVGKIECFFMNIL 26


>UniRef50_Q04UH8 Cluster: Sulfatase; n=4; Leptospira|Rep: Sulfatase
           - Leptospira borgpetersenii serovar Hardjo-bovis (strain
           JB197)
          Length = 817

 Score = 32.7 bits (71), Expect = 4.8
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = +1

Query: 277 CFVLISFHSLVYCIFVTREIIYEIRKSLFDLANVFDSVIIFSYVFIMLGRLKCVFVYIIV 456
           CF+L  FHS    + +    I+ +   +F+ + +FD + I +   +   R+  V ++II 
Sbjct: 217 CFLLFWFHSCGSLLGILSATIFYLSARVFESSPIFDLIRIVTLKNVSRNRIVLVLLFIIC 276

Query: 457 T 459
           T
Sbjct: 277 T 277


>UniRef50_A7QZ68 Cluster: Chromosome undetermined scaffold_265,
           whole genome shotgun sequence; n=7; Vitis vinifera|Rep:
           Chromosome undetermined scaffold_265, whole genome
           shotgun sequence - Vitis vinifera (Grape)
          Length = 926

 Score = 32.7 bits (71), Expect = 4.8
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 293 DIRTKHIHGPVNSTIKNYALLRSIRIYYTRI 201
           D+ +   HGP+ ++I N + LR + +YY R+
Sbjct: 278 DLSSNSFHGPIPTSIGNLSSLRELNLYYNRL 308


>UniRef50_Q5CYV2 Cluster: Putative uncharacterized protein; n=2;
           Cryptosporidium|Rep: Putative uncharacterized protein -
           Cryptosporidium parvum Iowa II
          Length = 503

 Score = 31.9 bits (69), Expect = 8.3
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +1

Query: 283 VLISFHSLVYCIFVTREIIYEIRKSLFDLANVFDSVIIFSYVFIMLGRLKCVFVYII-VT 459
           +L   +S    +F+  +II    +++ D  N FD+++I S +FI       + VY I V 
Sbjct: 66  ILFYKYSFNILVFLLIQIIQRNSRNILDFDNKFDTILIKSNIFIYNSWSFYLLVYTIGVI 125

Query: 460 YKVVINNQ 483
           Y + + N+
Sbjct: 126 YSIFLFNK 133


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 425,398,625
Number of Sequences: 1657284
Number of extensions: 8028203
Number of successful extensions: 18994
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18969
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29691847201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)