Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1021
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    28   0.69 
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    27   1.2  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     26   3.7  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   4.8  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    25   8.4  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   8.4  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   8.4  

>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 28.3 bits (60), Expect = 0.69
 Identities = 15/64 (23%), Positives = 32/64 (50%)
 Frame = -2

Query: 301 NETILERSTFTAPSTAPSRIMHYYDPSVYITLV*YYPYELITIQYYNIITGIINNFSYLL 122
           ++ +L+   F    +A S + +   PSV +    +Y  EL +  + + I   INN+S+ +
Sbjct: 464 SQRLLDDGVFDDVLSAISSMSNIESPSVRLLPAVFYGAELSSTSFLSTIHSFINNWSHYI 523

Query: 121 NTLY 110
           +  +
Sbjct: 524 SASF 527


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1315

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +1

Query: 277  CFVLISFHSLVYCIFVTREIIYEIRKSLFDLANVFDSVIIFSYVFIMLGR 426
            CF  ++ +S +   F+T  I+Y    +L D   +F  ++I   + + +GR
Sbjct: 1070 CFQYMALYSAIQ--FITVSILYTTNSNLGDFQFLFIDLVIILPIAVFMGR 1117


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 247 LMVLLTGP*MCFVLISFHSLVYCI-FVTREIIYEIRKSL 360
           ++ L   P MC + ISF +L Y + F+T  +  E+   L
Sbjct: 727 ILFLTFSPTMCMLSISFEALFYVVLFITLGLWMELETEL 765


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +1

Query: 301  SLVYCIFVTREIIYEIRKSLFDLANVFDSVIIFSYVFIMLGRLKCVFVYIIV 456
            S +   F  + +I+      +   N FD   IF Y ++ML  L    + +I+
Sbjct: 1090 SQMISFFFYKNVIWTFILFWYQFYNEFDGNYIFDYTYVMLFNLLFTSLPVII 1141


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = +1

Query: 319  FVTREIIYEIRKSLFDLANVFDSVIIFSYVFIMLGRL 429
            F  + +++      + + N FD+  +F Y ++ML  L
Sbjct: 1073 FFYKSVVWTFTLFWYQIYNNFDANYLFDYTYVMLFNL 1109


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 298 ETILERSTFTAPSTAPSRIMHYYDPSVY 215
           +T+   S  +  ST P   ++YYDP+ Y
Sbjct: 500 DTLRSYSPASQVSTPPFGFVYYYDPNQY 527


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 325  TREIIYEIRKSLFDLANVFDSVIIFSYVFIM 417
            T+ I+YEI  +LF  +  F  +   SY+ ++
Sbjct: 1012 TKGILYEIMSTLFVFSRAFPFLFDLSYLHLL 1042


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,902,404
Number of Sequences: 5004
Number of extensions: 38663
Number of successful extensions: 71
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)