Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1021
         (500 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0122 - 8669422-8669609,8669759-8670111,8670669-8670824,867...    27   8.5  

>05_03_0122 -
           8669422-8669609,8669759-8670111,8670669-8670824,
           8670999-8671168,8672133-8672297,8673190-8673384,
           8673506-8673634,8673759-8673980
          Length = 525

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = -2

Query: 232 YDPSVYITLV*YYPYELITIQYYNIITGIINNFSYLLN 119
           +DP+ ++     +P  +I + YY +   + NN +   N
Sbjct: 401 HDPTEFLQFANGFPRAVIDVHYYTVFNDLFNNLTVQQN 438


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,377,928
Number of Sequences: 37544
Number of extensions: 181409
Number of successful extensions: 316
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)