Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1021
         (500 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59255| Best HMM Match : aPHC (HMM E-Value=0.88)                     29   2.8  
SB_46500| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_5622| Best HMM Match : DUF6 (HMM E-Value=2.6e-12)                   27   6.6  
SB_215| Best HMM Match : ALG3 (HMM E-Value=0.18)                       27   8.7  

>SB_59255| Best HMM Match : aPHC (HMM E-Value=0.88)
          Length = 213

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +1

Query: 304 LVYCIFVTREIIYEIRKSLFDLANVFDSVIIFSYVFIMLGRLKCVFVYIIVTYKVVINNQ 483
           +VY +F    I+Y++ K  F +  VF    I   V  +   +  VF  + + Y+V +  Q
Sbjct: 81  IVYQVFKIAFIVYQVLKIAFIVYQVFKIAFIVYQVLKIAFIMYQVFKIVFIVYQVKVKAQ 140


>SB_46500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 269 GPVNSTIKNYALLRSIRIYYTRIILPLRTDNDTI 168
           G V+  +K  A LRSIR++  R+    +  NDTI
Sbjct: 54  GVVHMVVKASAQLRSIRVFVRRVEEAAQKTNDTI 87


>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1480

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 387  CHYIFLCIYHVRSLKMCVCLYNC 455
            C  +F C+Y   +L +CVCL  C
Sbjct: 1150 CPRVFTCLYACVNLSVCVCLPVC 1172



 Score = 28.3 bits (60), Expect = 3.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 387  CHYIFLCIYHVRSLKMCVCLYNC 455
            C  +F C+Y   +L +CVCL  C
Sbjct: 1187 CPRVFTCLYACVNLSVCVCLPVC 1209


>SB_5622| Best HMM Match : DUF6 (HMM E-Value=2.6e-12)
          Length = 224

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 367 LANVFDSVIIFSYVFIMLGRLKCVFVYIIVTYKVVIN 477
           L+N  DS     YVF+ LG   C+ VY+++  + + N
Sbjct: 50  LSNNGDSSEALGYVFL-LGNTLCMSVYVLIQKRFIFN 85


>SB_215| Best HMM Match : ALG3 (HMM E-Value=0.18)
          Length = 521

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = +1

Query: 316 IFVTREIIYEIRKSLFDLANVFDSVIIFSYVFIMLGRLKCVFVYIIV 456
           +FV+  I+  +  SL+   ++F S+ IF  VF+ L  L+ +FV + +
Sbjct: 11  LFVSLYILRVMFVSLYIFRDLFVSLYIFRDVFVSLYVLRVMFVSLYI 57


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,304,971
Number of Sequences: 59808
Number of extensions: 261218
Number of successful extensions: 567
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)