Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1021
         (500 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82052-6|CAB04829.4|  327|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z74031-10|CAA98450.1|  399|Caenorhabditis elegans Hypothetical p...    30   1.1  
Z83123-6|CAD45601.1|  327|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z82052-8|CAD89751.2|  325|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z68493-6|CAA92792.1|  335|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AL023844-1|CAA19526.1|  401|Caenorhabditis elegans Hypothetical ...    27   5.8  
U64840-7|AAB04965.1|  340|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>Z82052-6|CAB04829.4|  327|Caenorhabditis elegans Hypothetical
           protein T25E12.11 protein.
          Length = 327

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = -1

Query: 338 IISLVTKIQYTSE*NDIR-TKHIHGPVNSTIKNYALLRS-IRIYYTRIILP--LRTDNDT 171
           +IS +T   Y     DIR  +H+H P +  + NY   +S + + +  IILP    T N +
Sbjct: 198 VISFLTPFIYIPIMIDIRKNRHLHSPQHMFLHNYIFFQSFLVVLFKLIILPFCFETGNSS 257

Query: 170 I 168
           I
Sbjct: 258 I 258


>Z74031-10|CAA98450.1|  399|Caenorhabditis elegans Hypothetical
           protein F32D8.10 protein.
          Length = 399

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/62 (24%), Positives = 32/62 (51%)
 Frame = +1

Query: 244 FLMVLLTGP*MCFVLISFHSLVYCIFVTREIIYEIRKSLFDLANVFDSVIIFSYVFIMLG 423
           F + ++ G  +  + I F++ ++ +FVT +           L ++FD  I F+Y+ +M  
Sbjct: 44  FWLCVVAGVTVSIISIVFNTFIFFVFVTNKQHRRSPNLYLLLLSLFDVFIAFAYIAVMSV 103

Query: 424 RL 429
           R+
Sbjct: 104 RI 105


>Z83123-6|CAD45601.1|  327|Caenorhabditis elegans Hypothetical
           protein T04A11.12 protein.
          Length = 327

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 196 YPYELITIQYYNIITGIINNFSYLLNTLY 110
           +P+  I  +      G++NNFS L NTL+
Sbjct: 188 FPFGAIIFRIERTFFGLVNNFSLLFNTLF 216


>Z82052-8|CAD89751.2|  325|Caenorhabditis elegans Hypothetical
           protein T25E12.13 protein.
          Length = 325

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -1

Query: 338 IISLVTKIQYTSE*NDIR-TKHIHGPVNSTIKNYALLR-SIRIYYTRIILP 192
           +IS +T   Y     DIR  +H+H P +  + NY   + S+ + +  IILP
Sbjct: 196 VISFLTPFIYIPIMIDIRKNRHLHSPQHMFLHNYIFFQSSLVVLFKLIILP 246


>Z68493-6|CAA92792.1|  335|Caenorhabditis elegans Hypothetical
           protein C33A12.8 protein.
          Length = 335

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -2

Query: 196 YPYELITIQYYNIITGIINNFSYLLNTLYSLRLQ---NLLVF 80
           YP   + I Y N   G+ N++ YL NT+  L L    N+L+F
Sbjct: 188 YPLGAVHIYYANAAFGMRNSYLYLYNTVAWLSLSILANILLF 229


>AL023844-1|CAA19526.1|  401|Caenorhabditis elegans Hypothetical
           protein Y48A6B.1 protein.
          Length = 401

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
 Frame = +1

Query: 358 LFDLAN-----VFDSVIIFSYVFIMLGRLKCVFV 444
           LFDL N      FD +I F+ V+ +L R  C+FV
Sbjct: 8   LFDLENNSTIYFFDQLIAFNQVYTVLHRYLCLFV 41


>U64840-7|AAB04965.1|  340|Caenorhabditis elegans Hypothetical
           protein ZC317.1 protein.
          Length = 340

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = -1

Query: 338 IISLVTKIQYTSE*NDIRTKHIHGPVNSTIKNYALLRSIRIYYTR--IILPLRTDNDTIL 165
           + S++TK Q     ND+  + IHG V + I    L R I +   +  II+ +  D DT  
Sbjct: 253 VCSMITKNQQLVTVNDLEFRKIHGVVCTNI----LARGIDVSSVKHTIIMEMSADFDTYK 308

Query: 164 QHYHRDY*QFFLF 126
               R     FLF
Sbjct: 309 HRIGRVSISGFLF 321


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,234,435
Number of Sequences: 27780
Number of extensions: 205051
Number of successful extensions: 472
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)