Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1021
         (500 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27210.1 68418.m03246 expressed protein weak similarity to se...    29   1.3  
At1g47640.1 68414.m05292 expressed protein similar to seven tran...    29   2.3  
At1g47625.1 68414.m05290 hypothetical protein this may be a pseu...    28   3.1  

>At5g27210.1 68418.m03246 expressed protein weak similarity to seven
           transmembrane domain orphan receptor [Mus musculus]
           GI:4321619
          Length = 297

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +2

Query: 176 RYQFVRVILYECNIYGWIVVVHNS*WCC*RGRECASF*YRFIHLYTVFL*LEKLFMK 346
           R  ++ +  Y C    W+V + N  WCC +G EC        +L T+F     LF++
Sbjct: 66  RRSYIMIAYYGCL---WLVSLLNLAWCCLQGWECTPGKEVVWNLLTLFTTSGMLFLE 119


>At1g47640.1 68414.m05292 expressed protein similar to seven
           transmembrane domain protein GI:3550427 from [Homo
           sapiens]
          Length = 228

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 116 VIFVTFTKLTSVLIERVKGTHFVKI*SYELVPIVLFA 6
           VI  T   +TS L +RV G HF KI  +EL   ++ A
Sbjct: 178 VIIATMPSITSYL-KRVNGWHFPKIVGFELATSLVMA 213


>At1g47625.1 68414.m05290 hypothetical protein this may be a
           pseudogene.  No suitable start codon was identified.
          Length = 156

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -1

Query: 116 VIFVTFTKLTSVLIERVKGTHFVKI*SYELVPIVLF 9
           VI  T   +TS L +RV G HF KI  +EL   + F
Sbjct: 100 VIIATMPSITSYL-KRVNGWHFPKIVGFELATSLSF 134


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,066,909
Number of Sequences: 28952
Number of extensions: 167756
Number of successful extensions: 321
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)