Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1020
         (750 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC002873-1|AAH02873.1|  184|Homo sapiens chromosome 3 open readi...    96   1e-19
BC111004-1|AAI11005.1|  127|Homo sapiens C3orf60 protein protein.      91   4e-18
Y16793-1|CAA76389.3|  449|Homo sapiens type I hair keratin 7 pro...    31   5.8  
AJ786655-1|CAH10350.1|  410|Homo sapiens hHa7 protein protein.         31   5.8  
BC035971-1|AAH35971.1|  414|Homo sapiens HERV-H LTR-associating ...    30   7.7  
AK000692-1|BAA91323.1|  220|Homo sapiens protein ( Homo sapiens ...    30   7.7  
AF126162-1|AAD48396.1|  414|Homo sapiens HERV-H LTR associating ...    30   7.7  

>BC002873-1|AAH02873.1|  184|Homo sapiens chromosome 3 open reading
           frame 60 protein.
          Length = 184

 Score = 95.9 bits (228), Expect = 1e-19
 Identities = 50/128 (39%), Positives = 69/128 (53%)
 Frame = +2

Query: 128 KTTVRVLNNEYDLGLMIDSFATYGFKLNNGITVLGPMAIFPRTVLSWQVADSDDVTEESL 307
           +T + +L  E    + IDS+ + GF +N G  VLGP A+ P +V+ W V    D+TE+S 
Sbjct: 44  RTRISLLQREAAQAMYIDSYNSRGFMIN-GNRVLGPCALLPHSVVQWNVGSHQDITEDSF 102

Query: 308 KLFKLLEPRXXXXXXXXXXXXRSKIDKAFKAARANELNIEILATEHACSTFNFLNAEGRS 487
            LF LLEPR                 +  +A R   + +E+  T +AC+TFNFL  EGR 
Sbjct: 103 SLFWLLEPRIEIVVVGTGDRTERLQSQVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRV 162

Query: 488 VAAALIPP 511
             AALIPP
Sbjct: 163 TGAALIPP 170


>BC111004-1|AAI11005.1|  127|Homo sapiens C3orf60 protein protein.
          Length = 127

 Score = 91.1 bits (216), Expect = 4e-18
 Identities = 47/114 (41%), Positives = 63/114 (55%)
 Frame = +2

Query: 170 LMIDSFATYGFKLNNGITVLGPMAIFPRTVLSWQVADSDDVTEESLKLFKLLEPRXXXXX 349
           + IDS+ + GF +N G  VLGP A+ P +V+ W V    D+TE+S  LF LLEPR     
Sbjct: 1   MYIDSYNSRGFMIN-GNRVLGPCALLPHSVVQWNVGSHQDITEDSFSLFWLLEPRIEIVV 59

Query: 350 XXXXXXXRSKIDKAFKAARANELNIEILATEHACSTFNFLNAEGRSVAAALIPP 511
                       +  +A R   + +E+  T +AC+TFNFL  EGR   AALIPP
Sbjct: 60  VGTGDRTERLQSQVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIPP 113


>Y16793-1|CAA76389.3|  449|Homo sapiens type I hair keratin 7
           protein.
          Length = 449

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 526 HVDFERWYQGSSHGSALCVQEVECGTCVFCCQ 431
           H D E+W+Q  S G +L  Q + C   + CCQ
Sbjct: 288 HQDVEQWFQAQSEGISL--QAMSCSEELQCCQ 317


>AJ786655-1|CAH10350.1|  410|Homo sapiens hHa7 protein protein.
          Length = 410

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 526 HVDFERWYQGSSHGSALCVQEVECGTCVFCCQ 431
           H D E+W+Q  S G +L  Q + C   + CCQ
Sbjct: 249 HQDVEQWFQAQSEGISL--QAMSCSEELQCCQ 278


>BC035971-1|AAH35971.1|  414|Homo sapiens HERV-H LTR-associating 2
           protein.
          Length = 414

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 12/62 (19%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
 Frame = +2

Query: 131 TTVRVLNNEYDL--GLMIDSFATYGFKLNNGITVLGPMAIFPRTVLSWQVADSDDVTEES 304
           T ++V+ N+  L  G+ +     Y  +  N   +   ++++PR +++W++ D+  ++E +
Sbjct: 125 TAIQVITNKVVLKVGVFLTPVMKYEKRNTNSFLICSVLSVYPRPIITWKM-DNTPISENN 183

Query: 305 LK 310
           ++
Sbjct: 184 ME 185


>AK000692-1|BAA91323.1|  220|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20685 fis, clone KAIA3109. ).
          Length = 220

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 12/62 (19%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
 Frame = +2

Query: 131 TTVRVLNNEYDL--GLMIDSFATYGFKLNNGITVLGPMAIFPRTVLSWQVADSDDVTEES 304
           T ++V+ N+  L  G+ +     Y  +  N   +   ++++PR +++W++ D+  ++E +
Sbjct: 125 TAIQVITNKVVLKVGVFLTPVMKYEKRNTNSFLICSVLSVYPRPIITWKM-DNTPISENN 183

Query: 305 LK 310
           ++
Sbjct: 184 ME 185


>AF126162-1|AAD48396.1|  414|Homo sapiens HERV-H LTR associating
           protein 2 protein.
          Length = 414

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 12/62 (19%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
 Frame = +2

Query: 131 TTVRVLNNEYDL--GLMIDSFATYGFKLNNGITVLGPMAIFPRTVLSWQVADSDDVTEES 304
           T ++V+ N+  L  G+ +     Y  +  N   +   ++++PR +++W++ D+  ++E +
Sbjct: 125 TAIQVITNKVVLKVGVFLTPVMKYEKRNTNSFLICSVLSVYPRPIITWKM-DNTPISENN 183

Query: 305 LK 310
           ++
Sbjct: 184 ME 185


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,888,570
Number of Sequences: 237096
Number of extensions: 1939600
Number of successful extensions: 3735
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3733
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)