Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1019
(550 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19943| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 7e-11
SB_52466| Best HMM Match : Cation_ATPase_C (HMM E-Value=6.7e-12) 61 5e-10
SB_42324| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 7e-06
SB_52615| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 7e-06
SB_47271| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 8e-04
SB_43063| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_46614| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_49496| Best HMM Match : DUF81 (HMM E-Value=3.6) 29 2.5
SB_33375| Best HMM Match : ADK (HMM E-Value=1.6e-30) 28 4.4
SB_28420| Best HMM Match : DDE (HMM E-Value=0.00017) 28 4.4
SB_51114| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_30273| Best HMM Match : SIS (HMM E-Value=1.2e-25) 27 7.6
>SB_19943| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 188
Score = 64.1 bits (149), Expect = 7e-11
Identities = 26/46 (56%), Positives = 36/46 (78%)
Frame = +1
Query: 205 NSTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDFIAXFLQFQLTV 342
+ +DVAK+++D++L DDNF SIV A+ WGRNVY+ + FL FQ TV
Sbjct: 3 SGSDVAKDSADVVLLDDNFGSIVWAIKWGRNVYNTVVKFLMFQFTV 48
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/33 (63%), Positives = 25/33 (75%)
Frame = +3
Query: 396 APLKAXQMLXVNLIMDTLASLALATEMPPPDLL 494
+PL A Q+L VNLIMD+LASLAL + P DLL
Sbjct: 66 SPLGATQLLWVNLIMDSLASLALTRDFPTDDLL 98
>SB_52466| Best HMM Match : Cation_ATPase_C (HMM E-Value=6.7e-12)
Length = 573
Score = 61.3 bits (142), Expect = 5e-10
Identities = 25/47 (53%), Positives = 35/47 (74%)
Frame = +1
Query: 211 TDVAKEASDIILTDDNFSSIVKAVMWGRNVYDFIAXFLQFQLTVNVV 351
TD+A+EASDI+L D FSS++ + WGR++Y+ + FLQFQLT V
Sbjct: 171 TDIAQEASDIVLKGDKFSSVLDTIKWGRHIYETVLKFLQFQLTATWV 217
Score = 37.1 bits (82), Expect = 0.009
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = +3
Query: 387 FRTAPLKAXQMLXVNLIMDTLASLALATEMPPPDLL 494
F+ + A Q+L +NLIMD LASLAL + P D+L
Sbjct: 229 FQKSIFSAAQLLWLNLIMDALASLALTGDHPTDDIL 264
>SB_42324| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 47.6 bits (108), Expect = 7e-06
Identities = 21/48 (43%), Positives = 34/48 (70%)
Frame = +1
Query: 205 NSTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDFIAXFLQFQLTVNV 348
+ +DV+K+A+D+IL DDNF+SIV V GR ++D + + + LT N+
Sbjct: 193 SGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNI 240
>SB_52615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1154
Score = 47.6 bits (108), Expect = 7e-06
Identities = 19/48 (39%), Positives = 37/48 (77%)
Frame = +1
Query: 205 NSTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDFIAXFLQFQLTVNV 348
+ TDV+KEA+++IL DD+F++I+ A+ G+ ++ I F++FQL+ ++
Sbjct: 708 SGTDVSKEAAEMILVDDDFNTIMAAIEEGKGIFYNIKNFVRFQLSTSI 755
>SB_47271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 811
Score = 40.7 bits (91), Expect = 8e-04
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = +1
Query: 211 TDVAKEASDIILTDDNFSSI 270
TDVAKEASDIILTDDNF SI
Sbjct: 792 TDVAKEASDIILTDDNFRSI 811
>SB_43063| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +1
Query: 199 VDNSTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDFIAXFLQFQLTVNVVG 354
+ TDVA EA+DI+L + + A+ R I F L N++G
Sbjct: 51 IGTGTDVAVEAADIVLIKSDLMDVAAAIDLSRVTVRRIHLNFAFALLYNMIG 102
>SB_46614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 388
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Frame = +3
Query: 288 GPQRVRLHRXVPAVPAHRQRGGPSSWPLSEH---APFRTAPLKAXQMLXVNLIMDTLASL 458
G ++ R P + +H+ R P+ H A + P+K+ Q N +
Sbjct: 262 GNRQSRATNQEPPIKSHQSRATSQEPPIKSHQSRATNQEPPIKSHQSRATNQEPPIKSHQ 321
Query: 459 ALATEMPPPDLLHGTLRTDQAP 524
+ AT PP H + T+Q P
Sbjct: 322 SRATNQEPPIKSHQSRATNQEP 343
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Frame = +3
Query: 321 PAVPAHRQRGGPSSWPLSEH---APFRTAPLKAXQMLXVNLIMDTLASLALATEMPPPDL 491
P + +H+ R P+ H A + P+K+ Q N + + AT PP
Sbjct: 287 PPIKSHQSRATNQEPPIKSHQSRATNQEPPIKSHQSRATNQEPPIKSHQSRATNQEPPIK 346
Query: 492 LHGTLRTDQAP 524
H + T+Q P
Sbjct: 347 SHQSRATNQEP 357
>SB_49496| Best HMM Match : DUF81 (HMM E-Value=3.6)
Length = 302
Score = 29.1 bits (62), Expect = 2.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 309 HRXVPAVPAHRQRGGPSSW 365
H +PA+P+HRQ P +W
Sbjct: 186 HAALPALPSHRQHTSPGNW 204
>SB_33375| Best HMM Match : ADK (HMM E-Value=1.6e-30)
Length = 297
Score = 28.3 bits (60), Expect = 4.4
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +1
Query: 118 PIKRLIWSE----TGLRRVLRHVLEPT*YTNVDNSTDVAKEASDIILTDDNFSSIVKAVM 285
P+K IWS+ TG + +HV E YT++ T VA+EA D +++ +
Sbjct: 234 PLKCQIWSKGGPATGKKTHCKHVAERFNYTHIMPGTLVAQEAQK---DTDRAKQLIQTIS 290
Query: 286 WGRNV 300
G +V
Sbjct: 291 AGNDV 295
>SB_28420| Best HMM Match : DDE (HMM E-Value=0.00017)
Length = 609
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 40 SFLQRHSTDIKVNVPSE*KRPTKSKLPIKRLIWSETGLRRVLR 168
+FL++H+ I++ KRP K K IW T R++R
Sbjct: 253 AFLKKHN--IRMRARHRDKRPVKQSFETKLRIWHATARERLIR 293
>SB_51114| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 1 PRHTFPAXTAPGNSFLQRHSTDIKVNVPS 87
P T A T PG S L ST++ +PS
Sbjct: 252 PSRTSSASTVPGESLLDYESTEVTEKIPS 280
>SB_30273| Best HMM Match : SIS (HMM E-Value=1.2e-25)
Length = 303
Score = 27.5 bits (58), Expect = 7.6
Identities = 22/75 (29%), Positives = 36/75 (48%)
Frame = +1
Query: 142 ETGLRRVLRHVLEPT*YTNVDNSTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDFIAXF 321
ETG + R +P Y +++ V + + +I +DN V AV+ GRN F+
Sbjct: 13 ETGWSSLAREEGKPIEYYFASDASAVIEHTNKVIFLEDN---DVAAVVNGRNYASFMQKE 69
Query: 322 LQFQLTVNVVGRHRG 366
+ F+ +VV RG
Sbjct: 70 I-FEQPESVVNTMRG 83
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,964,717
Number of Sequences: 59808
Number of extensions: 285302
Number of successful extensions: 609
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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