Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1019
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   1.5  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   4.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   4.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.2  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 13  FPAXTAPGNSFLQRHSTDIKVNVPSE 90
           FP    PG + +++ ST   V +P E
Sbjct: 531 FPITLQPGKNTIEQKSTKSSVTIPFE 556


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 250 DDNFSSIVKAVMWGRNVYD 306
           DD+    + + +WGR++YD
Sbjct: 624 DDSNVVQIDSPVWGRHIYD 642


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 250 DDNFSSIVKAVMWGRNVYD 306
           DD+    + + +WGR++YD
Sbjct: 624 DDSNVVQIDSPVWGRHIYD 642


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +1

Query: 490 CCTEPY 507
           CCTEPY
Sbjct: 231 CCTEPY 236


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 68  LRLTCRPSERDRQNRNFL*NALYGARR 148
           +RL CR  E     RN +   L G+RR
Sbjct: 387 IRLPCREVEAAATARNVVAPFLIGSRR 413


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,558
Number of Sequences: 438
Number of extensions: 2683
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)