Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1018
         (700 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4D1F4 Cluster: Putative uncharacterized protein; n=2; ...    34   2.9  
UniRef50_Q9NKP1 Cluster: Protein kinase, putative; n=2; Leishman...    33   5.1  
UniRef50_Q2JDW8 Cluster: Single-stranded DNA-binding protein; n=...    33   8.9  

>UniRef50_Q4D1F4 Cluster: Putative uncharacterized protein; n=2;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 1134

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +2

Query: 47  RRTLPTNERGSGGGVVAQEPTTQVPLTASNKHHRARDHV 163
           RR+LP +ERGS  G V   P+T + +  S+ HH   +++
Sbjct: 766 RRSLPCSERGSRSGSVLVRPSTHLLIGLSDGHHELFEYL 804


>UniRef50_Q9NKP1 Cluster: Protein kinase, putative; n=2;
            Leishmania|Rep: Protein kinase, putative - Leishmania
            major
          Length = 3112

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 15/26 (57%), Positives = 15/26 (57%)
 Frame = +2

Query: 29   ANLSCPRRTLPTNERGSGGGVVAQEP 106
            A LSCP   LP N  GSGGG V   P
Sbjct: 1694 ATLSCPNTQLPANGSGSGGGSVVLVP 1719


>UniRef50_Q2JDW8 Cluster: Single-stranded DNA-binding protein; n=2;
           Frankia|Rep: Single-stranded DNA-binding protein -
           Frankia sp. (strain CcI3)
          Length = 225

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 20/48 (41%), Positives = 25/48 (52%)
 Frame = -2

Query: 168 KLTWSRAR*CLLLAVNGT*VVGSCATTPPPEPRSLVGRVRRGQERLAL 25
           +LTW  AR   L    G+ VV + AT  P +P +LVG    G E  AL
Sbjct: 108 ELTWHAARSERLARRPGSAVVAAAATDVPSDPSALVGSALVGSEHGAL 155


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 587,475,396
Number of Sequences: 1657284
Number of extensions: 10578376
Number of successful extensions: 27014
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27005
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)