Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1018
         (700 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-1912|AAF48279.1|  458|Drosophila melanogaster CG15753-P...    32   0.65 
AE014134-2026|AAS64677.1|  969|Drosophila melanogaster CG4705-PB...    30   3.5  
AE014134-2025|AAF53065.2|  989|Drosophila melanogaster CG4705-PA...    30   3.5  
X57484-1|CAA40722.1|  264|Drosophila melanogaster tra-2 protein.       29   6.1  
M76381-1|AAA69686.1|  136|Drosophila melanogaster transformer-2 ...    29   6.1  
M30939-3|AAA28955.1|  226|Drosophila melanogaster transformer-2 ...    29   6.1  
M30939-2|AAA28957.1|  136|Drosophila melanogaster transformer-2 ...    29   6.1  
M30939-1|AAA28954.1|  264|Drosophila melanogaster transformer-2 ...    29   6.1  
M23633-1|AAA28953.1|  264|Drosophila melanogaster protein ( D.me...    29   6.1  
J03155-1|AAA62771.1|  256|Drosophila melanogaster transformer-2 ...    29   6.1  
AY058768-1|AAL13997.1|  264|Drosophila melanogaster SD04329p pro...    29   6.1  
AE013599-1918|AAM68560.1|  136|Drosophila melanogaster CG10128-P...    29   6.1  
AE013599-1916|AAM68558.1|  226|Drosophila melanogaster CG10128-P...    29   6.1  
AE013599-1915|AAM68557.1|  226|Drosophila melanogaster CG10128-P...    29   6.1  
AE013599-1914|AAS64911.1|  264|Drosophila melanogaster CG10128-P...    29   6.1  
AE013599-1913|AAS64910.1|  264|Drosophila melanogaster CG10128-P...    29   6.1  
AE013599-1912|AAF58232.2|  264|Drosophila melanogaster CG10128-P...    29   6.1  

>AE014298-1912|AAF48279.1|  458|Drosophila melanogaster CG15753-PA
           protein.
          Length = 458

 Score = 32.3 bits (70), Expect = 0.65
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +2

Query: 44  PRRTLPTNERGSGG-GVVAQEPTTQVPLTA-SNKHHRARDHVNFFF 175
           PRR +   +RG G  GV +  P T  P  A +  HHR    + F F
Sbjct: 403 PRRRVAIRQRGGGAAGVFSLRPPTSTPTPAPTTTHHRPHIRIRFAF 448


>AE014134-2026|AAS64677.1|  969|Drosophila melanogaster CG4705-PB,
           isoform B protein.
          Length = 969

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +2

Query: 44  PRRTLPTNERGSGGGVVAQEPTTQVPLTASNKHHRARD 157
           P  TL   ERG+ GG  A  P     +  SNK++  RD
Sbjct: 3   PTETLRPGERGTAGGPGAGAPEQTYIVRQSNKYYEHRD 40


>AE014134-2025|AAF53065.2|  989|Drosophila melanogaster CG4705-PA,
           isoform A protein.
          Length = 989

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +2

Query: 44  PRRTLPTNERGSGGGVVAQEPTTQVPLTASNKHHRARD 157
           P  TL   ERG+ GG  A  P     +  SNK++  RD
Sbjct: 3   PTETLRPGERGTAGGPGAGAPEQTYIVRQSNKYYEHRD 40


>X57484-1|CAA40722.1|  264|Drosophila melanogaster tra-2 protein.
          Length = 264

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 102 SCATTPPPEPRSLVGRVRRGQERL 31
           S + +PPPEPR   GR  R +ER+
Sbjct: 63  SSSESPPPEPRHRSGRSSRDRERM 86


>M76381-1|AAA69686.1|  136|Drosophila melanogaster transformer-2
           protein D protein.
          Length = 136

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 102 SCATTPPPEPRSLVGRVRRGQERL 31
           S + +PPPEPR   GR  R +ER+
Sbjct: 63  SSSESPPPEPRHRSGRSSRDRERM 86


>M30939-3|AAA28955.1|  226|Drosophila melanogaster transformer-2
           protein B protein.
          Length = 226

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 102 SCATTPPPEPRSLVGRVRRGQERL 31
           S + +PPPEPR   GR  R +ER+
Sbjct: 25  SSSESPPPEPRHRSGRSSRDRERM 48


>M30939-2|AAA28957.1|  136|Drosophila melanogaster transformer-2
           protein D protein.
          Length = 136

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 102 SCATTPPPEPRSLVGRVRRGQERL 31
           S + +PPPEPR   GR  R +ER+
Sbjct: 63  SSSESPPPEPRHRSGRSSRDRERM 86


>M30939-1|AAA28954.1|  264|Drosophila melanogaster transformer-2
           protein A protein.
          Length = 264

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 102 SCATTPPPEPRSLVGRVRRGQERL 31
           S + +PPPEPR   GR  R +ER+
Sbjct: 63  SSSESPPPEPRHRSGRSSRDRERM 86


>M23633-1|AAA28953.1|  264|Drosophila melanogaster protein (
           D.melanogaster transformer-2 (tra-2) protein mRNA,
           complete cds. ).
          Length = 264

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 102 SCATTPPPEPRSLVGRVRRGQERL 31
           S + +PPPEPR   GR  R +ER+
Sbjct: 63  SSSESPPPEPRHRSGRSSRDRERM 86


>J03155-1|AAA62771.1|  256|Drosophila melanogaster transformer-2
           protein.
          Length = 256

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 102 SCATTPPPEPRSLVGRVRRGQERL 31
           S + +PPPEPR   GR  R +ER+
Sbjct: 55  SSSESPPPEPRHRSGRSSRDRERM 78


>AY058768-1|AAL13997.1|  264|Drosophila melanogaster SD04329p
           protein.
          Length = 264

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 102 SCATTPPPEPRSLVGRVRRGQERL 31
           S + +PPPEPR   GR  R +ER+
Sbjct: 63  SSSESPPPEPRHRSGRSSRDRERM 86


>AE013599-1918|AAM68560.1|  136|Drosophila melanogaster CG10128-PB,
           isoform B protein.
          Length = 136

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 102 SCATTPPPEPRSLVGRVRRGQERL 31
           S + +PPPEPR   GR  R +ER+
Sbjct: 63  SSSESPPPEPRHRSGRSSRDRERM 86


>AE013599-1916|AAM68558.1|  226|Drosophila melanogaster CG10128-PD,
           isoform D protein.
          Length = 226

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 102 SCATTPPPEPRSLVGRVRRGQERL 31
           S + +PPPEPR   GR  R +ER+
Sbjct: 25  SSSESPPPEPRHRSGRSSRDRERM 48


>AE013599-1915|AAM68557.1|  226|Drosophila melanogaster CG10128-PC,
           isoform C protein.
          Length = 226

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 102 SCATTPPPEPRSLVGRVRRGQERL 31
           S + +PPPEPR   GR  R +ER+
Sbjct: 25  SSSESPPPEPRHRSGRSSRDRERM 48


>AE013599-1914|AAS64911.1|  264|Drosophila melanogaster CG10128-PG,
           isoform G protein.
          Length = 264

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 102 SCATTPPPEPRSLVGRVRRGQERL 31
           S + +PPPEPR   GR  R +ER+
Sbjct: 63  SSSESPPPEPRHRSGRSSRDRERM 86


>AE013599-1913|AAS64910.1|  264|Drosophila melanogaster CG10128-PF,
           isoform F protein.
          Length = 264

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 102 SCATTPPPEPRSLVGRVRRGQERL 31
           S + +PPPEPR   GR  R +ER+
Sbjct: 63  SSSESPPPEPRHRSGRSSRDRERM 86


>AE013599-1912|AAF58232.2|  264|Drosophila melanogaster CG10128-PA,
           isoform A protein.
          Length = 264

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 102 SCATTPPPEPRSLVGRVRRGQERL 31
           S + +PPPEPR   GR  R +ER+
Sbjct: 63  SSSESPPPEPRHRSGRSSRDRERM 86


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,412,927
Number of Sequences: 53049
Number of extensions: 493233
Number of successful extensions: 1430
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1430
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)