Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1015
         (396 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...   159   1e-40
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...   154   4e-39
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    29   0.35 
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    25   3.2  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   4.3  
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    25   5.6  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    24   9.8  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    24   9.8  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    24   9.8  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    24   9.8  

>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score =  159 bits (386), Expect = 1e-40
 Identities = 75/117 (64%), Positives = 93/117 (79%), Gaps = 3/117 (2%)
 Frame = +1

Query: 1   MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 180
           MT+KRRN GR KHGRGHVK VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY 
Sbjct: 1   MTQKRRNNGRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYS 60

Query: 181 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 342
            + +PKLY KL YCVSCAIHS+VVR RS++ RRIRT PP+  + RD  +  P AV +
Sbjct: 61  EYTIPKLYIKLQYCVSCAIHSRVVRVRSREGRRIRTPPPRVRYNRDGKKVNPTAVAK 117


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score =  154 bits (374), Expect = 4e-39
 Identities = 72/117 (61%), Positives = 92/117 (78%), Gaps = 3/117 (2%)
 Frame = +1

Query: 1   MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 180
           MT+KRRN GR KHGRGH K VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY 
Sbjct: 1   MTQKRRNCGRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYS 60

Query: 181 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 342
            + +PK+Y KL YCVSCAIH++VVR RS++ RRIRT PP+  + RD  R  P A+ +
Sbjct: 61  EYAIPKIYVKLQYCVSCAIHARVVRVRSREGRRIRTPPPRVRYNRDGKRVNPAAIAK 117


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 28.7 bits (61), Expect = 0.35
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +1

Query: 82  RCVPKDKAIKKFVIRNIVEAAAVRDI 159
           RCVPKDKAI   + +NI  A  VRD+
Sbjct: 20  RCVPKDKAILNPLAKNI--ADVVRDL 43


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
           subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 248 LSGTDRRKTEESVLLPRVTSLGT 316
           ++  DR +TE SVL  RVT +G+
Sbjct: 1   MAAVDRSRTEISVLSDRVTDVGS 23


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 220 CVSCAIHSKVVRNRSKKDRRIRTPPKS 300
           C SC+   K   N+  + RR++  PKS
Sbjct: 142 CGSCSDSKKPQSNKKHRGRRVKHSPKS 168


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = -1

Query: 141 RFYDVPNHELFDSLVFWHAPRAVCASHGFNVTTSMLGASS 22
           + +DV + +L + +     P+A+C  +  ++ TS++  SS
Sbjct: 115 KVFDVESIDLVNIIDLEFLPKAICCFNSPSLKTSLIAVSS 154


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +1

Query: 88  VPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNRSK 267
           +PKDKA++    RN  +  A   I DA         KL A+L   V     SK  +  SK
Sbjct: 167 IPKDKAVENNHQRNAEKPVASDKITDA---------KLLARLER-VRAWKESKAKQEASK 216

Query: 268 K-DRRIRTPPK 297
           K + ++ T P+
Sbjct: 217 KEEHKLNTKPQ 227


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 280 IRTPPKSNFPRDMSR 324
           IRTP KS FP+D ++
Sbjct: 157 IRTPKKSYFPKDHAK 171


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 76   CARCVPKDKAIKKFVIRNIVEAAAVRDINDAS 171
            C R  P  KA+    +RN +E A    I D +
Sbjct: 1214 CCRSSPMQKALMVQKVRNTLEKAVTLAIGDGA 1245


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 7/27 (25%), Positives = 18/27 (66%)
 Frame = +3

Query: 216 LLRVMRHPQQSCQEQIEERQKNPYSSQ 296
           +  ++ HP++  Q+Q+E+ Q+  +S +
Sbjct: 421 IFNLLFHPEEVQQQQLEQMQQQQFSPE 447


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,319,537
Number of Sequences: 5004
Number of extensions: 21845
Number of successful extensions: 56
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)