Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1014
(490 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 152 2e-38
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac... 152 3e-38
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce... 28 0.87
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 2.0
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 27 2.0
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 26 2.7
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 25 4.6
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 25 6.1
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 25 8.1
SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyce... 25 8.1
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 8.1
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 152 bits (369), Expect = 2e-38
Identities = 71/108 (65%), Positives = 88/108 (81%)
Frame = +3
Query: 33 KPSXKAAKIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQV 212
K + +A++++IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++ V
Sbjct: 7 KTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPV 66
Query: 213 RGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNI 356
RGIS KLQEEERER+D YVPEVS LE D I VD DTKDMLK L +++I
Sbjct: 67 RGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSI 114
>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 131
Score = 152 bits (368), Expect = 3e-38
Identities = 73/119 (61%), Positives = 93/119 (78%)
Frame = +3
Query: 33 KPSXKAAKIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQV 212
K + +A++++IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++ V
Sbjct: 7 KTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPV 66
Query: 213 RGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQ 389
RGIS KLQEEERER+D YVPEVS LE D + VD DTKDMLK L ++ I +++ PA Q
Sbjct: 67 RGISFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI-PVRVLAPAPQ 124
>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 27.9 bits (59), Expect = 0.87
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -3
Query: 368 LQAINIVEVQHLQHILGVGVYFDDVMFESRHFWDIVVTPLTLLFL-KFDR-DSSHL 207
L+ NI+E +++ + +YF+ M + +FW I P +L KF + ++SHL
Sbjct: 368 LEVKNIIEQRNVTTMENCNLYFNPEMPTTIYFWKIYSAPTWMLARPKFSQINTSHL 423
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 26.6 bits (56), Expect = 2.0
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 204 SQVRGISIKLQEEERERRDNYVPEV 278
S V ISIK QEEER+R+ E+
Sbjct: 351 SHVDSISIKAQEEERKRQAEIEKEI 375
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 26.6 bits (56), Expect = 2.0
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 189 RRLRHSQVRGISIKLQEEERERRDNYVPEVS 281
R+ S+ R S KL EEER+RR +V +++
Sbjct: 218 RKRSRSRPRERSSKLSEEERDRRTVFVSQLA 248
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 26.2 bits (55), Expect = 2.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 332 QHILGVGVYFDDVMFESRHFWDIVVTPLTLLFLKFDRD 219
Q L VG+ DD+ +R+ ++ TP++ L DRD
Sbjct: 172 QTALNVGIQLDDMGVFARNHVKVLGTPISTLKTSEDRD 209
>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 528
Score = 25.4 bits (53), Expect = 4.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 169 PAILFLRGLVGMIAISSHILLFVSK 95
P I LRGLV A H+L F++K
Sbjct: 457 PIIAQLRGLVNESAPGKHVLTFLNK 481
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 25.0 bits (52), Expect = 6.1
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 15/82 (18%)
Frame = +3
Query: 15 WVVSGLKPSXKAAKIIIEKYYT-RLTLDFDTNKRICE--------------EIAIIPTKP 149
W + + S AAK +EK Y L LD + I EIA++ TKP
Sbjct: 158 WKATAIGKSSTAAKTFLEKRYNDELELDDAVHTAILALKETFEGELTEDNIEIAVVSTKP 217
Query: 150 LRNKIAGFATHLMRRLRHSQVR 215
+ I G RL S++R
Sbjct: 218 TDSGIVGVPGGHFCRLSQSEIR 239
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 24.6 bits (51), Expect = 8.1
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +3
Query: 249 ERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGL 365
+R D E + ++ + +DPD KD+ +++ N N +
Sbjct: 303 DRFDKVEEEYTPIKDERELIDPDQKDVFDLVNDNQFNDI 341
>SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 218
Score = 24.6 bits (51), Expect = 8.1
Identities = 7/28 (25%), Positives = 17/28 (60%)
Frame = +3
Query: 228 KLQEEERERRDNYVPEVSALEHDIIEVD 311
+ + +E+ RRD + L+H+I+ ++
Sbjct: 102 RARRKEKNRRDEVAEAILGLQHEIVRIN 129
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 24.6 bits (51), Expect = 8.1
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3
Query: 195 LRHSQVRGISIKLQEEERERRDNYVPEVSALEH 293
L++ + K Q+ ++R D + EVSA++H
Sbjct: 853 LKYKSLVSFMFKEQDANKKREDFHSGEVSAIQH 885
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,628,024
Number of Sequences: 5004
Number of extensions: 30231
Number of successful extensions: 98
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -