Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1014
         (490 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0066 - 537729-538163                                            138   3e-33
10_07_0174 + 13815478-13815903                                        137   4e-33
03_02_0943 + 12598616-12598789,12599790-12601250                       31   0.38 
06_01_0889 - 6807449-6809257                                           30   1.1  
05_01_0006 - 44159-44206,44805-44850,45730-45818,46377-46394,464...    28   4.6  
03_02_0324 - 7463482-7463601,7463660-7463736,7463827-7463883,746...    27   6.1  
11_04_0376 - 16965504-16966101,16966212-16966416,16967175-169681...    27   8.1  

>03_01_0066 - 537729-538163
          Length = 144

 Score =  138 bits (333), Expect = 3e-33
 Identities = 66/116 (56%), Positives = 90/116 (77%)
 Frame = +3

Query: 33  KPSXKAAKIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQV 212
           K   K ++ +IEKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF+THLMRR++   V
Sbjct: 7   KTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRRIQRGPV 66

Query: 213 RGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP 380
           RGIS+KLQEEERERR ++VP+ SALE D I VD +T DML  L   ++ G+ + QP
Sbjct: 67  RGISLKLQEEERERRMDFVPDRSALEVDDIRVDKETLDMLTSLGMADLPGV-VRQP 121


>10_07_0174 + 13815478-13815903
          Length = 141

 Score =  137 bits (332), Expect = 4e-33
 Identities = 64/115 (55%), Positives = 88/115 (76%)
 Frame = +3

Query: 33  KPSXKAAKIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQV 212
           K   K ++ +IEKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF THLMRR++   V
Sbjct: 7   KTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRRIQRGPV 66

Query: 213 RGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQ 377
           RGIS+KLQEEERERR ++VPE SALE + I VD +T +ML  L   ++ G++  Q
Sbjct: 67  RGISLKLQEEERERRMDFVPEKSALEVEEIRVDKETMEMLAALGMADLPGVERQQ 121


>03_02_0943 + 12598616-12598789,12599790-12601250
          Length = 544

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 19/60 (31%), Positives = 35/60 (58%)
 Frame = +3

Query: 165 AGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLD 344
           A +++HL+RR+        + K Q EE ++  +   + + LEHD+I  + +T D+LK L+
Sbjct: 41  AAWSSHLIRRMFAPP----NPKEQSEESKQPVDIKEQAAQLEHDLIIKEKETLDVLKELE 96


>06_01_0889 - 6807449-6809257
          Length = 602

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 195 LRHSQVRGI-SIKLQEEERERRDNYVPEVSALEHDIIEVDPD 317
           LRH Q R I ++ +    R R + YVP+     HD+ E D +
Sbjct: 487 LRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDVAEEDKE 528


>05_01_0006 -
           44159-44206,44805-44850,45730-45818,46377-46394,
           46490-46609,46702-46772,47038-47086,47567-47658,
           47769-47811,47928-48049,48143-48426,48961-49148,
           49220-49336,49516-49557,49991-50101,50530-50688,
           50710-50769,50850-50927,51010-51103,51182-51483,
           51659-51721,51808-51936
          Length = 774

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +3

Query: 219 ISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKML 341
           ++I++Q  +  +R   + +V A E   I  DP+TK+++K +
Sbjct: 615 LAIEVQPLDDRKRKGEIVKVYANEQKKITCDPETKELIKKI 655


>03_02_0324 -
           7463482-7463601,7463660-7463736,7463827-7463883,
           7464154-7464246,7464528-7464654,7464836-7466794
          Length = 810

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 201 HSQVRGISIKLQEEERERRD-NYVPEVSALEHDIIEVDPD 317
           H Q + I  KL E  R  R+  Y PEV A  HD+ E D +
Sbjct: 551 HPQSKMIYKKLSELLRRIREMGYNPEVEATLHDVEEEDKE 590


>11_04_0376 -
           16965504-16966101,16966212-16966416,16967175-16968197,
           16968241-16968892,16969025-16969387,16970095-16970451
          Length = 1065

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 317 VGVYFDDVMFESRHFWDIVVTPL 249
           V + FDDV  E   +W++++TP+
Sbjct: 252 VFLVFDDVWNERSDYWELLITPM 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,220,095
Number of Sequences: 37544
Number of extensions: 183217
Number of successful extensions: 529
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)