Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1014
(490 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31174| Best HMM Match : LIM_bind (HMM E-Value=0) 32 0.29
SB_17465| Best HMM Match : Dpy-30 (HMM E-Value=0.05) 29 1.6
SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31) 28 3.6
SB_24326| Best HMM Match : DENN (HMM E-Value=0) 28 3.6
SB_24497| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021) 27 6.3
SB_49009| Best HMM Match : Ribosomal_S26e (HMM E-Value=7.3) 27 6.3
SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
>SB_31174| Best HMM Match : LIM_bind (HMM E-Value=0)
Length = 609
Score = 31.9 bits (69), Expect = 0.29
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -1
Query: 169 PAILFLRGLVGMIAISSHILLFVSKSSVNLV*YFSIIIFAAXLDGFSPD 23
P +LF+ G I + ++LFV+ S +V +++F A DG S D
Sbjct: 48 PVVLFVASSDGGIVFNVPVVLFVASSDGGIVFNVLVVLFVASSDGGSSD 96
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -1
Query: 169 PAILFLRGLVGMIAISSHILLFVSKSSVNLV*YFSIIIFAAXLDG 35
P +LF G I + ++LFV+ S +V +++F A DG
Sbjct: 31 PVVLFRGSSDGGILFNVPVVLFVASSDGGIVFNVPVVLFVASSDG 75
>SB_17465| Best HMM Match : Dpy-30 (HMM E-Value=0.05)
Length = 249
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +3
Query: 162 IAGFATHLMRRLRHSQVRGISIKLQE--EERERRDNYVPEVSALEHDIIEVDPDTKDML 332
I + ++MR+ R + R ++ +LQE E++R+D E++ L I +D KD L
Sbjct: 44 IRNLSRNIMRKWREAHERKVNKRLQELRIEKKRKDGEAKEIARLVTRKIPLDVLAKDWL 102
>SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31)
Length = 996
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -3
Query: 356 NIVEVQHLQHILGVGVYFDDVMFESRHF--WDIVVTP 252
N+ ++ +H++ G D M E++HF W++V P
Sbjct: 361 NLGSSRNYKHLMDAGGILSDKMHENKHFHSWNVVYVP 397
>SB_24326| Best HMM Match : DENN (HMM E-Value=0)
Length = 1281
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +3
Query: 21 VSGLKPSXKAAKIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATH 182
+ G+ + K +II YY R + NKR +E++I+ T L N TH
Sbjct: 1000 IGGVASAFKFLEIIHTNYYGRDIREETANKREEDELSIVSTGSLSNLSDQSDTH 1053
>SB_24497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +3
Query: 57 IIIEKYYTRLTLDFDTNKRI--CEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRG 218
II + T+L K I C E + ++P+ ++ H+M R +H +RG
Sbjct: 48 IITTNFRTKLATTLPPKKNIDMCPEFDAVTSQPVTAEVPRQTNHVMTRSQHRILRG 103
>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
Length = 1217
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +3
Query: 120 EEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDI 299
+ + +P++ LRN++ + L R + Q I K +EE+ + NY+ + EH +
Sbjct: 456 KNLQAMPSEGLRNQLTLMSVALQRSIFTIQHDHIKAKKREEQEQMAQNYL-RTARKEHKL 514
Query: 300 I 302
+
Sbjct: 515 M 515
>SB_49009| Best HMM Match : Ribosomal_S26e (HMM E-Value=7.3)
Length = 163
Score = 27.5 bits (58), Expect = 6.3
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Frame = +3
Query: 144 KPLRNKIAGFATHLMRRLRHSQVRGIS-IKLQEEERERRDNYVPEVS-ALEHDII-EVDP 314
K LR ++ FA+H RRLR + +R K+ + ++ Y P VS A+ II ++D
Sbjct: 56 KALRGRVGLFASHCERRLRRTALRSRGWTKILKNHTLFQELY-PRVSRAISGTIIFDLDH 114
Query: 315 DTKDMLKMLD----FNNINGLQLTQPATQ 389
+ + + D ++N + +P+T+
Sbjct: 115 KRRSTISLQDNTFPRQSLNAKSIAEPSTR 143
>SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1040
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 72 YYTRLTLDFDTNKRICEEIAIIPTKPLRNK 161
YY++LT D+D+ K EI I+P+ P+ K
Sbjct: 14 YYSKLTHDYDSGKLQSPEI-ILPSVPVVTK 42
>SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1087
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +3
Query: 183 LMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKD 326
L +R RHS+ S + RE+ +++ ++ LE++ D DT++
Sbjct: 54 LEKRYRHSRKGTESHNTGTDTREKVLSHITQIQTLENESHNTDTDTRE 101
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,861,668
Number of Sequences: 59808
Number of extensions: 205870
Number of successful extensions: 527
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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