Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1013
         (550 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17440.2 68414.m02133 transcription initiation factor IID (TF...    30   1.2  
At1g17440.1 68414.m02132 transcription initiation factor IID (TF...    30   1.2  
At4g32360.1 68417.m04607 NADP adrenodoxin-like ferredoxin reduct...    29   2.0  
At4g35120.1 68417.m04992 kelch repeat-containing F-box family pr...    29   2.7  
At3g26350.1 68416.m03287 expressed protein  ; expression support...    28   4.7  
At2g42470.1 68415.m05254 meprin and TRAF homology domain-contain...    27   6.2  
At3g10070.1 68416.m01207 transcription initiation factor IID (TF...    27   8.3  

>At1g17440.2 68414.m02133 transcription initiation factor IID
           (TFIID) subunit A family protein similar to SP|Q16514
           Transcription initiation factor TFIID 20/15 kDa subunits
           (TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
           profile PF03847: Transcription initiation factor TFIID
           subunit A
          Length = 683

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 18  SQSQPHLPAVHPADQRTRLWQPSPSPSVLSYPNSTI 125
           + SQP++ + +P      +    PSPS LS+P+S++
Sbjct: 70  NNSQPNISSPNPTSSNPPIGAQIPSPSPLSHPSSSL 105


>At1g17440.1 68414.m02132 transcription initiation factor IID
           (TFIID) subunit A family protein similar to SP|Q16514
           Transcription initiation factor TFIID 20/15 kDa subunits
           (TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
           profile PF03847: Transcription initiation factor TFIID
           subunit A
          Length = 683

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 18  SQSQPHLPAVHPADQRTRLWQPSPSPSVLSYPNSTI 125
           + SQP++ + +P      +    PSPS LS+P+S++
Sbjct: 70  NNSQPNISSPNPTSSNPPIGAQIPSPSPLSHPSSSL 105


>At4g32360.1 68417.m04607 NADP adrenodoxin-like ferredoxin reductase
           identical to NADP adrenodoxin-like ferredoxin reductase
           GI:28192433 from [Arabidopsis thaliana]
          Length = 483

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 289 DXIRTHW*NLRSGISPEHESENVNIKNFAHMKIHWSC*FM 408
           D + T +  +RSG++P+H    + I  F+ +  H  C F+
Sbjct: 53  DRLPTPFGLVRSGVAPDHPETKIAINQFSRVAQHERCSFI 92


>At4g35120.1 68417.m04992 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 389

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 3   GCQQSSQSQPHLPAVHPADQRTRLWQPSPSPSV 101
           GC++S +   +   V   D +T+ W P PSPSV
Sbjct: 181 GCRKSEEESMNCGEVF--DLKTQTWNPLPSPSV 211


>At3g26350.1 68416.m03287 expressed protein  ; expression supported
           by MPSS
          Length = 356

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 12  QSSQSQPHLPAV-HPADQRTRLWQPSP 89
           Q+S +QPH+P + HP     +  QP P
Sbjct: 32  QTSSNQPHIPPIPHPKKSHHKTTQPHP 58


>At2g42470.1 68415.m05254 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein contains Pfam
           profile PF00917: MATH domain
          Length = 898

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 163 RQYAPNDTQYIVVSGPSYIAATYGWLRLTKYTKILLS 273
           R +   D   + +S P+  +  YGW R TKY+ I+L+
Sbjct: 62  RVWQIEDHLAVTLSVPNLESLRYGWERRTKYSFIVLN 98


>At3g10070.1 68416.m01207 transcription initiation factor IID
           (TFIID) subunit A family protein similar to hypothetical
           protein GB:CAB10099 [Schizosaccharomyces pombe];
           contains Pfam profile PF03847: Transcription initiation
           factor TFIID subunit A
          Length = 539

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 9   QQSSQSQPHLPAVHPADQR-TRLWQPSPSPSVLSYPNSTIS 128
           Q S+ SQP      P+D + + L Q  P+PS    P+S +S
Sbjct: 6   QSSTASQPPETPPQPSDSKPSTLTQIQPTPSTNPSPSSVVS 46


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,645,349
Number of Sequences: 28952
Number of extensions: 195106
Number of successful extensions: 482
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)