Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1010
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom...    33   0.030
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    26   4.5  
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa...    26   4.5  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    25   7.9  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    25   7.9  

>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 33.5 bits (73), Expect = 0.030
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +3

Query: 147 LKESLNLGIXYLETGPWYGQGSSEKVIGKAL--FGVPRDSYYI 269
           LK++ +LGI   +T   Y  G+SE V+GKA+   G  R  Y I
Sbjct: 50  LKQAWDLGINTFDTAEIYSNGNSETVMGKAIKELGWDRSEYVI 92


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = +1

Query: 82  VGSAAFXNIYGKYDEQKKPGXH*RKA*ISVSTIWKPDPGTVR 207
           + ++A  N++ KY +   PG    +A +SV T+ +P+P T++
Sbjct: 237 ITASALKNLWNKYGD---PGDVAFEAKVSVRTLSRPEPLTIK 275


>SPBC12C2.04 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +3

Query: 189 GPWYGQGSSEKVIGKALFGVPRDSYYIGQ*SRXLRXGHSKDVXLFCXENS 338
           GPW      EKV+GK+L      +  I +  R L+   + DV  F  EN+
Sbjct: 31  GPWNNAQRVEKVLGKSLRVTALINPLINESERVLKSKCASDV-AFAYENT 79


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 577 FRXPRSXDNRLQNYI 621
           FR PR  DN L+NYI
Sbjct: 475 FRKPRDQDNLLRNYI 489


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 382 VDLIQVHDITFAPDTSVCTQRDVAXXGASXERWKSSL 492
           V LIQ+  +   P  +V   R +   G    RWK+ +
Sbjct: 273 VPLIQISGLKRPPQATVVIGRQITRFGTLTARWKTGV 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,077,047
Number of Sequences: 5004
Number of extensions: 31386
Number of successful extensions: 49
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)