Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1010
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0351 - 17829874-17830005,17830250-17830267,17830544-178306... 40 0.001
07_01_0317 + 2229894-2230137,2231142-2231233,2231327-2231364,223... 31 1.2
10_08_0021 + 14217455-14217505,14217742-14217909,14219137-142193... 30 1.5
04_03_0439 + 15937934-15938167,15938276-15938476,15938852-159389... 29 4.7
04_03_0095 + 11114971-11115939,11115954-11116556 29 4.7
04_03_0438 + 15929220-15929453,15929564-15929764,15930874-159310... 28 6.2
04_03_0435 + 15902356-15902574,15902680-15902777,15905100-159051... 28 8.2
02_03_0384 + 18389895-18390439,18392056-18392341 28 8.2
01_05_0718 - 24575946-24576121,24576721-24576874,24576964-245770... 28 8.2
>12_02_0351 -
17829874-17830005,17830250-17830267,17830544-17830672,
17831037-17831336,17831447-17831675,17831762-17831989,
17832380-17832645
Length = 433
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Frame = +3
Query: 144 SLKESLNLGIXYLETGPWYGQGSSEKVIGKAL--FGVPRDSYYI 269
+++ +L+LGI + +T P+YG SE V+G L GVPRD + +
Sbjct: 149 AVRRALDLGINFFDTSPYYGGTVSESVLGDCLRAAGVPRDRFVV 192
Score = 31.5 bits (68), Expect = 0.67
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +2
Query: 425 LRYVLKETLPXXEQAXRDGKARFIGIADYDIDLMXEXVXE-SXVXISTILSYFEXHALXI 601
L ++ ET+P ++ GKARFIGI + + + + + ILSY + +
Sbjct: 239 LDQIVNETIPVLQKIKESGKARFIGITGLPLSIYTYVLDQVPPGSVDVILSYCH-YGIND 297
Query: 602 IAYRTILASXKSNG 643
A +L KS G
Sbjct: 298 TALVDLLPYLKSKG 311
>07_01_0317 +
2229894-2230137,2231142-2231233,2231327-2231364,
2231695-2231717,2232026-2232132,2232208-2232370,
2232581-2232663,2232775-2232837,2233049-2233072,
2233119-2233304
Length = 340
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 102 QYLWEI*RAKEAWXSLKESLNLGIXYLETGPWYGQGSSEKVIGKALFGVP 251
++ W+ + K A + S++ GI + +T YG G S + ++L G P
Sbjct: 77 EFQWDDRKLKAAKGAFDASVDCGITFFDTAEVYGAGISGAINSESLLGRP 126
>10_08_0021 +
14217455-14217505,14217742-14217909,14219137-14219340,
14219429-14219601,14219970-14220066,14220183-14220336,
14222029-14222209,14222858-14222898,14223146-14223231,
14223282-14223389,14223538-14223579
Length = 434
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +3
Query: 147 LKESLNLGIXYLETGPWYGQGSSEKVIGKALFGVPRDSYYI 269
++ + G+ + +T YG ++E ++GKAL +PR+ +
Sbjct: 45 VRRAFEAGVTFFDTSDAYGPHTNEVLLGKALKQLPREKVQV 85
>04_03_0439 +
15937934-15938167,15938276-15938476,15938852-15938911,
15939896-15939958,15940822-15940848,15941020-15941358
Length = 307
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 168 GIXYLETGPWYGQGSSEKVIGKALFGVPRD 257
G+ +L+T YG ++E ++GKAL G R+
Sbjct: 57 GVTHLDTSDMYGPHTNELLLGKALQGGVRE 86
>04_03_0095 + 11114971-11115939,11115954-11116556
Length = 523
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 135 AWXSLKESLNLGIXYLETGPWYGQGSSEKVIGKALFGVPR 254
AW ++ ES+NL + LET G G+S + I + + G PR
Sbjct: 215 AWLNVPESINLPL--LETMRLTGPGNSGRDIQRLISGCPR 252
>04_03_0438 +
15929220-15929453,15929564-15929764,15930874-15931046,
15931131-15931233,15931763-15932107
Length = 351
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 168 GIXYLETGPWYGQGSSEKVIGKALFGVPRD 257
G+ L+T YG ++E ++GKAL G RD
Sbjct: 57 GVTLLDTSDIYGPHTNELLLGKALQGGVRD 86
>04_03_0435 +
15902356-15902574,15902680-15902777,15905100-15905163,
15906707-15907045
Length = 239
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +3
Query: 147 LKESLNLGIXYLETGPWYGQGSSEKVIGKALFG 245
++ ++ G+ + +T YG ++E ++GKAL G
Sbjct: 45 IRHAIAAGVTFFDTSDLYGPHTNEVLLGKALQG 77
>02_03_0384 + 18389895-18390439,18392056-18392341
Length = 276
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 415 APDTSVCTQRDVAXXGASXERWKSSLHWDR 504
AP +SV T+RD RW+ HWDR
Sbjct: 26 APLSSVWTRRDEKLLEMLLWRWQLDPHWDR 55
>01_05_0718 -
24575946-24576121,24576721-24576874,24576964-24577060,
24577142-24577314,24577426-24577629,24577725-24577892,
24577938-24578084
Length = 372
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 168 GIXYLETGPWYGQGSSEKVIGKALFGVPRDSYYI 269
G+ + +T YG ++E ++GKAL +PR+ +
Sbjct: 84 GVTFFDTSDVYGPLANEILLGKALKQLPREQVQV 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,509,190
Number of Sequences: 37544
Number of extensions: 200547
Number of successful extensions: 409
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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