Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1010
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46445| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_57513| Best HMM Match : rve (HMM E-Value=0.0064)                    28   8.4  

>SB_46445| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 271

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +3

Query: 123 RAKEAWXSLKESLNLGIXYLETGPWYGQGSSEKVIGK 233
           R +E+   +  +L  GI Y++T PWYG   SE V+GK
Sbjct: 65  REEESIQVVHHALKSGINYIDTAPWYGHNKSEMVLGK 101


>SB_57513| Best HMM Match : rve (HMM E-Value=0.0064)
          Length = 515

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 463 LXXWQR-LFEYIPKCPEQKLYHVPGSDRHS 377
           L  W+R L EYIP   E++ +H+P  + H+
Sbjct: 425 LLYWRRWLKEYIPSLQERRKWHLPTRNLHA 454


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,643,341
Number of Sequences: 59808
Number of extensions: 234528
Number of successful extensions: 425
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)