Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1010
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-13|AAC48300.1|  439|Caenorhabditis elegans Mechanosensory...    50   2e-06
U53155-4|AAC48265.1|  619|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U00033-13|AAC48300.1|  439|Caenorhabditis elegans Mechanosensory
           abnormality protein14 protein.
          Length = 439

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 19/41 (46%), Positives = 29/41 (70%)
 Frame = +3

Query: 147 LKESLNLGIXYLETGPWYGQGSSEKVIGKALFGVPRDSYYI 269
           ++ ++  GI Y++TG WY Q  SE ++GKAL  +PR +YYI
Sbjct: 120 VETAIKQGINYIDTGYWYSQSRSESILGKALSKIPRKAYYI 160



 Score = 35.1 bits (77), Expect = 0.049
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +1

Query: 274 SKVXRYDXDTLKMXDFSAXKTAXXXXXXXXXXXXXYVDL--IQVHDITFAPDTSV 432
           +KV R++ D  +  DF A K               Y+D+  +Q+HD  FAP+ S+
Sbjct: 162 TKVGRFELDYARTFDFRADKILESLTNSLKRLQLTYIDICYVQIHDADFAPNESI 216


>U53155-4|AAC48265.1|  619|Caenorhabditis elegans Hypothetical
           protein ZC513.3 protein.
          Length = 619

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 385 DLIQVHDITFAPDTSVCTQRDVAXXGASXERWK 483
           D +  H +TF  DTS C+ +  A    +  +W+
Sbjct: 414 DTVMEHQMTFTGDTSRCSVQRAAEKNFNRRKWR 446


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,360,568
Number of Sequences: 27780
Number of extensions: 170230
Number of successful extensions: 277
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)