Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1009
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...   287   8e-80
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        25   0.59 
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    24   1.0  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    23   3.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.2  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    22   4.2  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    22   4.2  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    22   5.5  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   5.5  
DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory pro...    21   9.7  
DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory pro...    21   9.7  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   9.7  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score =  287 bits (703), Expect = 8e-80
 Identities = 124/198 (62%), Positives = 149/198 (75%), Gaps = 3/198 (1%)
 Frame = +3

Query: 33  RRANQLQFRARGKPXYPWXDAIMIQLREEGWIHHLSRHAVACFLTRGDLWISWEEGMKVF 212
           + A  L   A G+  +PW DAIM QLREEGWIHHL+RHAVACFLTRGDLW+SWEEGMKVF
Sbjct: 335 KNAEALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWLSWEEGMKVF 394

Query: 213 DELLLDADWSVNAGMWMWXXXXXXXXXXXHCYCPVRFGRKTDPNGDFIRKYIPALKNMPT 392
           +ELLLDADWSVNAGMWMW           HCYCP++FGRK DPNGD+IRKY+P LKNMP+
Sbjct: 395 EELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPIKFGRKADPNGDYIRKYLPVLKNMPS 454

Query: 393 RYIHEPWMAPESVQAAAQCSIGRDYPMPMVDHTKASQINIERIKQVYAQLARYK---PQA 563
           +YIHEPW APE VQ AA+C IG+DY +PMV+H  AS++NI+R+KQVY QL+ Y+     A
Sbjct: 455 QYIHEPWTAPEQVQRAAKCIIGKDYSLPMVNHAAASRVNIQRMKQVYQQLSNYRNVDNSA 514

Query: 564 TLNANAVQRPNVLASRXP 617
                  ++PNV+    P
Sbjct: 515 KFKDGFQEQPNVVTVGNP 532


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -3

Query: 314 RAVTVEKLLEKRRAGEPHPHACVHRPVC 231
           RAV V   + K     PHPH  V R  C
Sbjct: 113 RAVVVVSCVTKDEPFRPHPHNLVGREGC 140


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/48 (18%), Positives = 21/48 (43%)
 Frame = +3

Query: 111 REEGWIHHLSRHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAG 254
           ++ GW      H    +  +G+ W+ +E+     + + +  DW  + G
Sbjct: 319 KDSGWTKKWDEHGKVPYAYKGNQWVGYEDP----ESVQIKMDWIKSKG 362


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 159 FLTRGDLWISWEEGMKVFDELL 224
           F  + D+ ISW+E  +  DE+L
Sbjct: 452 FTEKADIDISWKEVKEAADEVL 473


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 436  RPPSAASDVTTPCRWSTTPRPRR*IS 513
            RPPS  +   T    STT RP   +S
Sbjct: 1175 RPPSTTNHWQTKTTTSTTTRPTTTVS 1200


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 394 ATYTSRGWPRSLCRR 438
           AT+ S GWP+ L ++
Sbjct: 121 ATFASYGWPKGLNKK 135


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 394 ATYTSRGWPRSLCRR 438
           AT+ S GWP+ L ++
Sbjct: 121 ATFASYGWPKGLNKK 135


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 450 CTGRPPAQTPGPS 412
           CT RP  Q P PS
Sbjct: 92  CTSRPKLQEPQPS 104


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 9   ANCGELTQRRANQLQFRARGKPXYPW 86
           A C +L+ +    L   A GK  +PW
Sbjct: 42  AQCNKLSNKSPPPLADAAVGKGFHPW 67


>DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory
           protein 16 protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 330 KTDPNGDFIRKYIPALK 380
           K DP G++ +KY   LK
Sbjct: 104 KFDPQGEYKKKYDELLK 120


>DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory
           protein 9 protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 330 KTDPNGDFIRKYIPALK 380
           K DP G++ +KY   LK
Sbjct: 104 KFDPQGEYKKKYDELLK 120


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 15  CGELTQRRANQLQFRARGKPXYPWXDAIMIQL 110
           C E T    N L+ ++R +P  P     M+Q+
Sbjct: 169 CNEFTTHVMNLLREQSRTRPITPKEIERMVQI 200


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,308
Number of Sequences: 336
Number of extensions: 3751
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)