Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1009
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    30   0.37 
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    29   0.85 
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    27   3.4  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    26   4.5  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    26   6.0  

>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +3

Query: 129 HHLSRHAVACFLTRGDLWISWEEGMKVFDELLLDADW 239
           H  +++ V    TRG + I+   G++++ +L+L  +W
Sbjct: 399 HRYAKNLVESVFTRGHILITTYAGLRIYGDLILPREW 435


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -1

Query: 283 NDEQENHIHMPAFTDQSASRSNSSNTFIPSSHEIQRSPLVKKQATACR 140
           N E+     MP+ ++ S+  +  S  FIPSS  I RS    K+ +A R
Sbjct: 3   NGEKSALGEMPSNSNSSSKLNAKSPNFIPSSSNIPRSSAKTKEHSADR 50


>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -1

Query: 331 FLPKRTGQ*QWKNCWKNDEQENHIHMPAFTDQSASRSNSSNTFIPSS 191
           FLP RTG  ++    KN E+E    +P+ ++ +   S  S++  P +
Sbjct: 445 FLPPRTGVSKYFKLQKNTEKEIDEQVPSQSNNTTPTSAKSDSASPQN 491


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 238 QSASRSNSSNTFIPSSHEIQRSPLVKKQATACRDKW 131
           Q  S + SS TF+PS++    +P ++   +A R  W
Sbjct: 19  QDPSDAQSSPTFVPSANPSLTTPWLQTTPSANRPTW 54


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -3

Query: 356 YEITIRVGFPSKTHRAVTVEKLLEKRRAGEPHP--HACVHRPVCIEE*LIE 210
           YE+   +    K +     +  ++K R GE     +ACVHR   IEE L+E
Sbjct: 342 YELAEELIKRDKAYVCHCTDAEIKKARGGEERGPRYACVHRDRPIEESLLE 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,380
Number of Sequences: 5004
Number of extensions: 58458
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)