Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1009
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0783 + 5835517-5835861,5835989-5836060,5836140-5836220,583... 207 7e-54
02_04_0317 + 21996324-21996681,21996833-21996859,21997299-219982... 101 5e-22
04_04_0072 + 22524974-22525310,22526334-22526552,22526826-225275... 98 5e-21
02_05_0008 + 24934917-24935229,24936387-24936608,24936876-249375... 64 1e-10
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 32 0.50
02_01_0623 - 4676847-4676879,4676953-4677115,4677467-4677620,467... 30 2.0
04_03_0771 + 19434460-19434987 29 4.7
06_03_1368 - 29612463-29612638,29613135-29613222,29613334-296134... 28 6.2
11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090 28 8.2
05_03_0299 - 11959441-11959541,11959720-11959777 28 8.2
>02_01_0783 +
5835517-5835861,5835989-5836060,5836140-5836220,
5836293-5836490,5836576-5836647,5836803-5836889,
5836986-5837084,5837191-5837274,5837351-5837437,
5837578-5837649,5837912-5838025,5838127-5838214,
5838293-5838388,5838507-5838694
Length = 560
Score = 207 bits (505), Expect = 7e-54
Identities = 91/177 (51%), Positives = 121/177 (68%), Gaps = 2/177 (1%)
Frame = +3
Query: 66 GKPXYPWXDAIMIQLREEGWIHHLSRHAVACFLTRGDLWISWEEGMKVFDELLLDADWSV 245
G+ YPW DAIMIQLR+ GW+HHL+RH+VACFLTRGDL+I WE+G VF+ LL+D+DW++
Sbjct: 362 GRTGYPWIDAIMIQLRKWGWMHHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAI 421
Query: 246 NAGMWMWXXXXXXXXXXXHCYCPVRFGRKTDPNGDFIRKYIPALKNMPTRYIHEPWMAPE 425
N G WMW Y P FG+K DPNG++IR +IP LK+MP YI+EPW AP
Sbjct: 422 NNGNWMWLSCSSFFYQYHRIYSPTSFGKKYDPNGNYIRHFIPVLKDMPKEYIYEPWTAPL 481
Query: 426 SVQAAAQCSIGRDYPMPMVDHTKASQINIERIKQVYA--QLARYKPQATLNANAVQR 590
S+Q A C IG+DYP P+VDH AS+ + + + YA +L KP ++N+ +R
Sbjct: 482 SIQKKANCIIGKDYPKPVVDHAIASKECKKMMGEAYASNRLDDDKPDKGKSSNSSRR 538
>02_04_0317 +
21996324-21996681,21996833-21996859,21997299-21998227,
21998317-21999162
Length = 719
Score = 101 bits (242), Expect = 5e-22
Identities = 53/142 (37%), Positives = 77/142 (54%), Gaps = 1/142 (0%)
Frame = +3
Query: 63 RGKPXYPWXDAIMIQLREEGWIHHLSRHAVACFLTRGDLWISWEEGMKVFDELLLDADWS 242
+G+ YP DA M +L GW+H R V+ F + L + W GMK F + LLDAD
Sbjct: 354 QGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV-LQLPWRWGMKYFWDTLLDADLE 412
Query: 243 VNAGMWMWXXXXXXXXXXX-HCYCPVRFGRKTDPNGDFIRKYIPALKNMPTRYIHEPWMA 419
+A W + P G K DP+G+++R+++P L +PT +IH PW A
Sbjct: 413 SDALGWQYISGSLPDGRELDRIDNPQLEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDA 472
Query: 420 PESVQAAAQCSIGRDYPMPMVD 485
PESV AA +G +YP+P+V+
Sbjct: 473 PESVLQAAGIELGSNYPLPIVE 494
>04_04_0072 +
22524974-22525310,22526334-22526552,22526826-22527532,
22527664-22528482
Length = 693
Score = 98.3 bits (234), Expect = 5e-21
Identities = 52/141 (36%), Positives = 75/141 (53%), Gaps = 1/141 (0%)
Frame = +3
Query: 63 RGKPXYPWXDAIMIQLREEGWIHHLSRHAVACFLTRGDLWISWEEGMKVFDELLLDADWS 242
+G+ YP DA M +L GW+H R V+ F + L + W GMK F + LLDAD
Sbjct: 337 QGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV-LQLPWRWGMKYFWDTLLDADLE 395
Query: 243 VNAGMWMWXXXXXXXXXXX-HCYCPVRFGRKTDPNGDFIRKYIPALKNMPTRYIHEPWMA 419
+A W + P G K DP+G+++R+++P L +PT +IH PW A
Sbjct: 396 SDALGWQYISGSLPDGRELDRIDNPQLEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDA 455
Query: 420 PESVQAAAQCSIGRDYPMPMV 482
P SV AA +G +YP+P+V
Sbjct: 456 PASVLQAAGVELGSNYPLPIV 476
>02_05_0008 +
24934917-24935229,24936387-24936608,24936876-24937591,
24937646-24937728,24938448-24938514,24938833-24939228,
24939276-24939318,24939380-24939474,24940287-24940314,
24940636-24940754
Length = 693
Score = 63.7 bits (148), Expect = 1e-10
Identities = 32/88 (36%), Positives = 49/88 (55%)
Frame = +3
Query: 324 GRKTDPNGDFIRKYIPALKNMPTRYIHEPWMAPESVQAAAQCSIGRDYPMPMVDHTKASQ 503
G+K DP+G ++R +IP L MPT +IH PW AP + A +G +YP P+VD A +
Sbjct: 470 GQKYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGFNYPKPIVDLHIARE 529
Query: 504 INIERIKQVYAQLARYKPQATLNANAVQ 587
+ I ++ QL + A L+ V+
Sbjct: 530 CLDDSISTMW-QLDTAEKLAELDGEVVE 556
Score = 44.4 bits (100), Expect = 9e-05
Identities = 25/68 (36%), Positives = 35/68 (51%)
Frame = +3
Query: 63 RGKPXYPWXDAIMIQLREEGWIHHLSRHAVACFLTRGDLWISWEEGMKVFDELLLDADWS 242
+G YP DA M +L GW H+ R ++ F + L I W GMK F ++LLDAD
Sbjct: 333 QGMTGYPLVDAGMRELWATGWTHNRIRVIISSFAVKF-LLIPWTWGMKYFWDVLLDADLE 391
Query: 243 VNAGMWMW 266
+ W +
Sbjct: 392 SDILGWQY 399
>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 31.9 bits (69), Expect = 0.50
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +3
Query: 369 PALKNMPTRYIHEPW-MAPESVQAAAQCSIGRDYPMPMVDHT-KASQINIERIKQVYAQL 542
P+L P+ +P + P ++ A S PMPM T +A+ QL
Sbjct: 2460 PSLVVQPSSQATQPQSILPGNMYRAMSSSPFSSTPMPMPHGTYRAAGAQPHAPSPHLQQL 2519
Query: 543 ARYKPQATLNANAVQRPNVLASRXP 617
P AT + N QRP++LAS P
Sbjct: 2520 RMPSPYATSHGNQHQRPSILASLLP 2544
>02_01_0623 -
4676847-4676879,4676953-4677115,4677467-4677620,
4678413-4678554,4678641-4678706,4679389-4679922
Length = 363
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 162 LTRGDLWISWEEGMKVFDELLLDADWSVNAGMW 260
+TR W+ +E+G K D +++ W V A +W
Sbjct: 136 VTRMGRWVDFEDGYKTMDIKFMESVWWVFAQLW 168
>04_03_0771 + 19434460-19434987
Length = 175
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 438 PPAQTPGPSTARVCSALACSSEPVCIS 358
PP +P PSTA V A +EP +S
Sbjct: 115 PPPPSPEPSTAAVAEPTAAVAEPAAVS 141
>06_03_1368 -
29612463-29612638,29613135-29613222,29613334-29613474,
29613561-29613595,29613990-29614054,29614286-29614335,
29614417-29614521,29614608-29614688,29614771-29614852,
29614941-29614995,29615111-29616164,29617202-29617289,
29617379-29617485,29617568-29617686,29617784-29617994
Length = 818
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 447 TGRPPAQTPGPSTARVCSALACSS 376
TGRP GP+TAR+ S +ACS+
Sbjct: 718 TGRP-GLVVGPTTARMISVIACSA 740
>11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090
Length = 1037
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 308 VTVE-KLLEKRRAGEPHPHACVHRPVCIEE*LIEHLHSFF 192
V VE KL AG P P+ C+H P CI +HLH +
Sbjct: 80 VAVEVKLSPPHVAGRPKPNDCLHTP-CINH---KHLHRHY 115
>05_03_0299 - 11959441-11959541,11959720-11959777
Length = 52
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 162 LTRGDLWISWEEGMKVFDELL 224
LT GD W+ W G +V E+L
Sbjct: 8 LTGGDWWLGWSWGCRVLTEML 28
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,668,208
Number of Sequences: 37544
Number of extensions: 450016
Number of successful extensions: 1207
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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