Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1009
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6930| Best HMM Match : FAD_binding_7 (HMM E-Value=0) 223 1e-58
SB_24027| Best HMM Match : FAD_binding_7 (HMM E-Value=0) 210 6e-55
SB_49633| Best HMM Match : FAD_binding_7 (HMM E-Value=0) 210 8e-55
SB_36192| Best HMM Match : No HMM Matches (HMM E-Value=.) 209 1e-54
SB_24026| Best HMM Match : FAD_binding_7 (HMM E-Value=1.1e-13) 145 3e-35
SB_21201| Best HMM Match : FAD_binding_7 (HMM E-Value=1.3e-05) 136 2e-32
SB_10209| Best HMM Match : No HMM Matches (HMM E-Value=.) 131 5e-31
SB_51314| Best HMM Match : FAD_binding_7 (HMM E-Value=0) 89 3e-18
SB_6621| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 9e-13
SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069) 30 2.1
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_21709| Best HMM Match : F5_F8_type_C (HMM E-Value=8.7e-21) 29 2.7
SB_18759| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 28 8.4
SB_38761| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_6930| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
Length = 506
Score = 223 bits (545), Expect = 1e-58
Identities = 94/156 (60%), Positives = 113/156 (72%)
Frame = +3
Query: 60 ARGKPXYPWXDAIMIQLREEGWIHHLSRHAVACFLTRGDLWISWEEGMKVFDELLLDADW 239
A + YP+ DAIM QLR EGW+HHL+RH+VACFLTRGDLWISWEEG+KVF+ LL+D DW
Sbjct: 303 AEARTGYPYIDAIMTQLRREGWVHHLARHSVACFLTRGDLWISWEEGLKVFERLLIDHDW 362
Query: 240 SVNAGMWMWXXXXXXXXXXXHCYCPVRFGRKTDPNGDFIRKYIPALKNMPTRYIHEPWMA 419
++NAG WMW Y PV FG+KTDPNGD+IRKYIP L P +YI+EPW A
Sbjct: 363 NLNAGNWMWLSASSFFHAYFRVYSPVAFGKKTDPNGDYIRKYIPKLSRYPPKYIYEPWNA 422
Query: 420 PESVQAAAQCSIGRDYPMPMVDHTKASQINIERIKQ 527
P +VQ A C IGRDYP P+VDH K N+ R+K+
Sbjct: 423 PLAVQEKAGCVIGRDYPCPIVDHNKVVTRNMSRMKE 458
>SB_24027| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
Length = 1074
Score = 210 bits (514), Expect = 6e-55
Identities = 86/164 (52%), Positives = 113/164 (68%)
Frame = +3
Query: 66 GKPXYPWXDAIMIQLREEGWIHHLSRHAVACFLTRGDLWISWEEGMKVFDELLLDADWSV 245
GK +PW DA+M QLREEGWIHHL+R AV CFLTRG LW+SWEEG K FDEL LDA+WS+
Sbjct: 527 GKTGFPWIDAMMRQLREEGWIHHLARQAVGCFLTRGCLWVSWEEGFKAFDELQLDAEWSL 586
Query: 246 NAGMWMWXXXXXXXXXXXHCYCPVRFGRKTDPNGDFIRKYIPALKNMPTRYIHEPWMAPE 425
NAG W+W YCPV G++ DP GD+I++Y+P ++ +P+ Y+ EPW AP
Sbjct: 587 NAGNWLWLSCSSYVNGAVPWYCPVEVGKQIDPTGDYIKRYVPEVRGLPSEYVCEPWNAPL 646
Query: 426 SVQAAAQCSIGRDYPMPMVDHTKASQINIERIKQVYAQLARYKP 557
SVQ A +C +G DYP P+VDH + I ++R++Q+ L P
Sbjct: 647 SVQKACRCVVGEDYPSPIVDHMEQRMICVQRMQQLSIDLGAKVP 690
Score = 180 bits (438), Expect = 1e-45
Identities = 77/159 (48%), Positives = 103/159 (64%)
Frame = +3
Query: 63 RGKPXYPWXDAIMIQLREEGWIHHLSRHAVACFLTRGDLWISWEEGMKVFDELLLDADWS 242
+G +PW DAI+ QLR+EGW+H +++ AV CFLT G LW SWEEG K+F EL+LDA WS
Sbjct: 27 QGMTGFPWIDAIIRQLRQEGWVHDVAQQAVGCFLTWGTLWQSWEEGFKLFGELMLDAGWS 86
Query: 243 VNAGMWMWXXXXXXXXXXXHCYCPVRFGRKTDPNGDFIRKYIPALKNMPTRYIHEPWMAP 422
NA W+ +CPV G+ DP+G +IRKYIP L + P+ +IH PW AP
Sbjct: 87 RNAFNWLNMSNSMLADGPLPYFCPVDVGKAIDPSGRYIRKYIPELASFPSEFIHAPWTAP 146
Query: 423 ESVQAAAQCSIGRDYPMPMVDHTKASQINIERIKQVYAQ 539
E +Q QC IG DYP P+VDH + +INI+ ++ + Q
Sbjct: 147 EEIQRDTQCVIGDDYPYPLVDHKEQRKINIQALQSMCKQ 185
Score = 144 bits (350), Expect = 5e-35
Identities = 59/99 (59%), Positives = 70/99 (70%)
Frame = +3
Query: 63 RGKPXYPWXDAIMIQLREEGWIHHLSRHAVACFLTRGDLWISWEEGMKVFDELLLDADWS 242
+GK +PW DA+M QLREEGWIHHL+R AV CFLTRG LW+SWEEG K FDEL LDA+WS
Sbjct: 976 KGKTGFPWIDAMMRQLREEGWIHHLARQAVGCFLTRGCLWVSWEEGFKAFDELQLDAEWS 1035
Query: 243 VNAGMWMWXXXXXXXXXXXHCYCPVRFGRKTDPNGDFIR 359
+NA W+W YCPV G+K DP GD+I+
Sbjct: 1036 LNASNWLWLSCSSYVHGAVPWYCPVEVGKKVDPTGDYIK 1074
>SB_49633| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
Length = 1291
Score = 210 bits (513), Expect = 8e-55
Identities = 86/164 (52%), Positives = 112/164 (68%)
Frame = +3
Query: 66 GKPXYPWXDAIMIQLREEGWIHHLSRHAVACFLTRGDLWISWEEGMKVFDELLLDADWSV 245
GK +PW DAIM QLREEGWIHHL+R AV CFLTRG LW+SWEEG K FDEL LDA+WS+
Sbjct: 57 GKTGFPWIDAIMRQLREEGWIHHLARQAVGCFLTRGCLWVSWEEGFKAFDELQLDAEWSL 116
Query: 246 NAGMWMWXXXXXXXXXXXHCYCPVRFGRKTDPNGDFIRKYIPALKNMPTRYIHEPWMAPE 425
NA W+W YCPV G+K DP GD+I++Y+P ++ +P+ Y+ EPW AP
Sbjct: 117 NASNWLWLSCSSYVHGAVPWYCPVEVGKKVDPTGDYIKRYVPEVRGLPSEYVCEPWNAPL 176
Query: 426 SVQAAAQCSIGRDYPMPMVDHTKASQINIERIKQVYAQLARYKP 557
SVQ A +C +G DYP P+VDH + I +++++Q+ L P
Sbjct: 177 SVQKACRCVVGEDYPSPIVDHMEQRMICVQKMQQLSIDLGAKVP 220
Score = 196 bits (479), Expect = 1e-50
Identities = 80/153 (52%), Positives = 103/153 (67%)
Frame = +3
Query: 63 RGKPXYPWXDAIMIQLREEGWIHHLSRHAVACFLTRGDLWISWEEGMKVFDELLLDADWS 242
+G +PW DAIM QL +GWIHHL+R AV CFLTRG LW+SWEEG K FDEL LDA+WS
Sbjct: 553 QGTTGFPWIDAIMRQLHAQGWIHHLARQAVGCFLTRGCLWVSWEEGFKAFDELQLDAEWS 612
Query: 243 VNAGMWMWXXXXXXXXXXXHCYCPVRFGRKTDPNGDFIRKYIPALKNMPTRYIHEPWMAP 422
+NAG W+W YCPV G+K DP G +IRKY+P ++ +P +I+EPW AP
Sbjct: 613 LNAGNWLWLSCSSYVHGAVPWYCPVEVGKKLDPTGKYIRKYVPEVRRLPLAFIYEPWKAP 672
Query: 423 ESVQAAAQCSIGRDYPMPMVDHTKASQINIERI 521
VQ A+C +G DYP P+ DH ++ +ER+
Sbjct: 673 LDVQIKARCVVGDDYPEPVCDHLLQRRVCVERL 705
Score = 146 bits (354), Expect = 2e-35
Identities = 61/110 (55%), Positives = 74/110 (67%)
Frame = +3
Query: 30 QRRANQLQFRARGKPXYPWXDAIMIQLREEGWIHHLSRHAVACFLTRGDLWISWEEGMKV 209
++ L +GK +PW DAIM QLREEGWIHHL+R AV CFLTRG LW+SWEEG K
Sbjct: 1033 EQHPEALSLWKQGKTGFPWIDAIMRQLREEGWIHHLARQAVGCFLTRGCLWVSWEEGFKA 1092
Query: 210 FDELLLDADWSVNAGMWMWXXXXXXXXXXXHCYCPVRFGRKTDPNGDFIR 359
FDEL LDA+WS+NAG W+W YCPV G++ DP G++IR
Sbjct: 1093 FDELQLDAEWSLNAGNWLWLSCSSYVHGAVPWYCPVEVGKQVDPTGEYIR 1142
>SB_36192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 563
Score = 209 bits (511), Expect = 1e-54
Identities = 92/159 (57%), Positives = 110/159 (69%)
Frame = +3
Query: 78 YPWXDAIMIQLREEGWIHHLSRHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGM 257
+PW DAIM QL++EGWIH+L+R AVA FLTRG LWISWE GMKVF E LLDADWS NAG
Sbjct: 379 FPWIDAIMSQLKQEGWIHYLARVAVASFLTRGCLWISWEAGMKVFAEHLLDADWSSNAGN 438
Query: 258 WMWXXXXXXXXXXXHCYCPVRFGRKTDPNGDFIRKYIPALKNMPTRYIHEPWMAPESVQA 437
WMW + CPV F + D +GD+IRKY+P LK P RYIHEPW AP +VQ
Sbjct: 439 WMWWSYSAFSQQFFNPPCPVEFSKSLDASGDYIRKYLPVLKGFPARYIHEPWKAPLNVQK 498
Query: 438 AAQCSIGRDYPMPMVDHTKASQINIERIKQVYAQLARYK 554
A+C IG+ YP PMVDH KA N+E + VY + +Y+
Sbjct: 499 MAKCIIGKSYPSPMVDHEKAVSKNMEEMTSVYKSVIQYR 537
>SB_24026| Best HMM Match : FAD_binding_7 (HMM E-Value=1.1e-13)
Length = 184
Score = 145 bits (351), Expect = 3e-35
Identities = 60/98 (61%), Positives = 69/98 (70%)
Frame = +3
Query: 66 GKPXYPWXDAIMIQLREEGWIHHLSRHAVACFLTRGDLWISWEEGMKVFDELLLDADWSV 245
GK +PW DAIM QLREEGWIHHL+R AV CFLTRG LW+SWEEG K FDEL LDA+WS+
Sbjct: 87 GKTGFPWIDAIMRQLREEGWIHHLARQAVGCFLTRGCLWVSWEEGFKAFDELQLDAEWSL 146
Query: 246 NAGMWMWXXXXXXXXXXXHCYCPVRFGRKTDPNGDFIR 359
NA W+W YCPV G+K DP GD+I+
Sbjct: 147 NASNWLWLSCSSYVHGAVPWYCPVEVGKKVDPTGDYIK 184
>SB_21201| Best HMM Match : FAD_binding_7 (HMM E-Value=1.3e-05)
Length = 142
Score = 136 bits (329), Expect = 2e-32
Identities = 59/116 (50%), Positives = 73/116 (62%)
Frame = +3
Query: 207 VFDELLLDADWSVNAGMWMWXXXXXXXXXXXHCYCPVRFGRKTDPNGDFIRKYIPALKNM 386
VF E LLDADWS NAG WMW + CPV F + D +GD++RKY+P LK
Sbjct: 1 VFAEHLLDADWSSNAGNWMWWSYSAFSQQFFNPPCPVEFSKSLDASGDYVRKYLPVLKGF 60
Query: 387 PTRYIHEPWMAPESVQAAAQCSIGRDYPMPMVDHTKASQINIERIKQVYAQLARYK 554
P RYIHEPW AP +VQ A+C IG+ YP PMVDH KA N+E + VY + +Y+
Sbjct: 61 PARYIHEPWKAPLNVQKMAKCIIGKSYPSPMVDHEKAVSKNMEEMTSVYKSVIQYR 116
>SB_10209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 798
Score = 131 bits (317), Expect = 5e-31
Identities = 55/123 (44%), Positives = 79/123 (64%), Gaps = 7/123 (5%)
Frame = +3
Query: 183 ISWEEGM-------KVFDELLLDADWSVNAGMWMWXXXXXXXXXXXHCYCPVRFGRKTDP 341
ISWEE + F+EL LDA+WS+N+G W+W +CPV G+K DP
Sbjct: 666 ISWEENKDHFLCWKQAFEELQLDAEWSMNSGSWLWLSCSAFFHGQIPWFCPVEVGKKLDP 725
Query: 342 NGDFIRKYIPALKNMPTRYIHEPWMAPESVQAAAQCSIGRDYPMPMVDHTKASQINIERI 521
+G +IRKY+P L++MP +Y++EPW AP+ +Q AA C IG DYP P+VDH + + ++R+
Sbjct: 726 SGSYIRKYVPELRSMPLKYLYEPWTAPDDIQRAAMCVIGEDYPHPIVDHIEQRKACLQRL 785
Query: 522 KQV 530
K V
Sbjct: 786 KTV 788
Score = 72.9 bits (171), Expect = 2e-13
Identities = 32/63 (50%), Positives = 42/63 (66%)
Frame = +3
Query: 354 IRKYIPALKNMPTRYIHEPWMAPESVQAAAQCSIGRDYPMPMVDHTKASQINIERIKQVY 533
I KY+P LK MPT Y+ EPW+AP VQ A C +G DYP P+VD A + I R+++VY
Sbjct: 278 IGKYVPELKKMPTEYVFEPWLAPLEVQETAGCIVGADYPNPLVDADVARKECIIRMREVY 337
Query: 534 AQL 542
+ L
Sbjct: 338 SGL 340
Score = 50.0 bits (114), Expect = 2e-06
Identities = 18/33 (54%), Positives = 26/33 (78%)
Frame = +3
Query: 66 GKPXYPWXDAIMIQLREEGWIHHLSRHAVACFL 164
GK +PW DAI+ QLR+EGWIHHL+R ++ ++
Sbjct: 250 GKTGFPWIDAIIRQLRQEGWIHHLARQSIGKYV 282
>SB_51314| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
Length = 524
Score = 89.0 bits (211), Expect = 3e-18
Identities = 46/139 (33%), Positives = 69/139 (49%)
Frame = +3
Query: 66 GKPXYPWXDAIMIQLREEGWIHHLSRHAVACFLTRGDLWISWEEGMKVFDELLLDADWSV 245
GK P+ DA M +L+E GW+ + R VA FL + DL + W G + F+ LLLD D
Sbjct: 344 GKTGVPFVDANMRELKETGWMSNRGRQNVASFLIK-DLGLDWRYGAEWFESLLLDHDVCS 402
Query: 246 NAGMWMWXXXXXXXXXXXHCYCPVRFGRKTDPNGDFIRKYIPALKNMPTRYIHEPWMAPE 425
N G W + + V+ G DP+GD+I+ ++P L +P +H PW
Sbjct: 403 NYGNWNYAAGIGNDPREGRKFNMVKQGLDYDPDGDYIKTWVPELAKIPGAKVHVPWTLKP 462
Query: 426 SVQAAAQCSIGRDYPMPMV 482
++ +G YP P+V
Sbjct: 463 GELRSSGVELGVTYPNPIV 481
>SB_6621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 70.9 bits (166), Expect = 9e-13
Identities = 27/67 (40%), Positives = 44/67 (65%)
Frame = +3
Query: 360 KYIPALKNMPTRYIHEPWMAPESVQAAAQCSIGRDYPMPMVDHTKASQINIERIKQVYAQ 539
+Y+P ++ +P+ Y+ EPW AP SVQ A +C +G DYP P+VDH + I ++R++Q+
Sbjct: 8 RYVPEVRGLPSEYVCEPWNAPLSVQKACRCVVGEDYPSPIVDHMEQRMICVQRMQQLSID 67
Query: 540 LARYKPQ 560
L P+
Sbjct: 68 LGAKGPR 74
>SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069)
Length = 932
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -1
Query: 256 MPAFTDQSASRSNSSNTFIPSSHEIQRSPLVKKQATACR 140
MP+ D+ ASR+ +SN+ IP S + Q S +T R
Sbjct: 534 MPSSADKQASRAATSNSTIPRSTDAQASRAATSNSTIPR 572
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -1
Query: 262 IHMPAFTDQSASRSNSSNTFIPSSHEIQRSPLVKKQATACR 140
+ +P+ D+ ASR+ +SN+ +PSS + Q S +T R
Sbjct: 514 VTIPSSADKQASRAATSNSTMPSSADKQASRAATSNSTIPR 554
>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +1
Query: 382 TCQRATYTSRGWPRSLCR---RPPSAASDVTTPCRWSTTPRPRR*ISNGSNR 528
T + +T TSR PRS R R PS S +TP ST R S GS R
Sbjct: 197 TSRTSTPTSRSTPRSRSRSRARTPSTPSTPSTPSTPSTITTSSRASSRGSAR 248
>SB_21709| Best HMM Match : F5_F8_type_C (HMM E-Value=8.7e-21)
Length = 532
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3
Query: 168 RGDLWISWEEGMKVFDELLLDADWSVNA 251
RGDLW+ E G +V LL A W A
Sbjct: 421 RGDLWMREESGAEVTKNWLLSAAWCARA 448
>SB_18759| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 450 SIGRDYPMPMVDHTKASQINIERIKQVYAQLARYKPQATLNANAVQ 587
SI D MPM + ERI++ + R + + TL NAVQ
Sbjct: 57 SIASDVSMPMSMRLPGFEFGTERIRKQPKKELRIRTRITLRKNAVQ 102
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 453 CCTGRPPAQTPGPSTARVCSALACSSEP 370
C T P +P P+T CS + C S P
Sbjct: 5339 CPTTGPSTASPVPTTVDPCSGVTCDSPP 5366
>SB_38761| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 169
Score = 27.9 bits (59), Expect = 8.4
Identities = 25/62 (40%), Positives = 32/62 (51%)
Frame = +1
Query: 358 GNTYRL*RTCQRATYTSRGWPRSLCRRPPSAASDVTTPCRWSTTPRPRR*ISNGSNRSTH 537
GNT L RT Q Y+ + SL RP A + R++T RP + NGSNRST+
Sbjct: 86 GNTKTL-RTVQIGNYS---YSTSLYCRPYVAMDSI----RYATRLRPMK---NGSNRSTY 134
Query: 538 NS 543
S
Sbjct: 135 QS 136
>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2323
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +1
Query: 418 PRSLCRRPPSAASDVTTPCRWSTTPRPRR*ISNGSNRSTHNSPDIS 555
PR+ C P + P WST P P + G S+ SPD+S
Sbjct: 2225 PRAECESDPVDSLFSEVPPEWSTLPSPEQNAFGGD--SSWASPDMS 2268
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,066,310
Number of Sequences: 59808
Number of extensions: 501392
Number of successful extensions: 1247
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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