Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1009
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41015-4|AAA82313.1|  317|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z81037-1|CAB02745.1|  819|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ...    28   7.4  
Z48178-1|CAA88204.1|  471|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AC024857-1|AAK31566.2|  869|Caenorhabditis elegans Temporarily a...    27   9.8  

>U41015-4|AAA82313.1|  317|Caenorhabditis elegans Hypothetical
           protein F20B6.5 protein.
          Length = 317

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -1

Query: 286 KNDEQENHIHMPAFTDQSASRSNSSNTFIPSSHEIQRSPLVKKQA 152
           K++EQ+ H H       ++ R+++  +F    H I RS   +++A
Sbjct: 225 KSEEQKGHDHPRRVPPPTSPRASTEESFYERIHSIMRSSFARRRA 269


>Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical protein
            F29G6.3b protein.
          Length = 1785

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = +3

Query: 300  HCYCPVRFGRKTDPNGDFIRKYIPALKNMPTRYIHEPWMAPESVQAAAQCSIGRDYPMPM 479
            H Y P    RKT    +    YIPAL     +  HE + +  S    +Q S     P  +
Sbjct: 1196 HQYVPQASPRKTISEVNRSHNYIPALPPKEHQSRHEHYQS-HSYLPPSQKSTSHQSPPKL 1254

Query: 480  VDHTKASQI 506
            ++H+   QI
Sbjct: 1255 INHSFVPQI 1263


>Z81037-1|CAB02745.1|  819|Caenorhabditis elegans Hypothetical
           protein C17E4.2 protein.
          Length = 819

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 477 MVDHTKASQINIERIKQVYAQLARYKPQATLNANAVQRPN 596
           +VDH K    +IE ++    QL +Y     +N   +Q  N
Sbjct: 11  LVDHIKEEMFHIEELRSEIEQLEQYIRNLQINFEKIQTEN 50


>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
           protein M01E10.2 protein.
          Length = 1286

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 382 TCQRATYTSRGWPRSLCRRPPSAASDVTTPCRWSTTP 492
           T  R T T+R W  +  + PP+ A     P    TTP
Sbjct: 309 TTPRRTITTRIWTTTTTQAPPTEAPPTEAPPTTQTTP 345


>Z48178-1|CAA88204.1|  471|Caenorhabditis elegans Hypothetical
           protein C05C10.1 protein.
          Length = 471

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/52 (19%), Positives = 24/52 (46%)
 Frame = +3

Query: 387 PTRYIHEPWMAPESVQAAAQCSIGRDYPMPMVDHTKASQINIERIKQVYAQL 542
           P +++      P  V  + QC+  ++ P P  D  +   + +  ++Q + Q+
Sbjct: 104 PLKWLPGLAFVPVHVDGSDQCAASQNCPCPRYDFLQQQMLTLPEVQQAFQQV 155


>AC024857-1|AAK31566.2|  869|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 305 protein.
          Length = 869

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 439 PPSAASDVTTPCRWSTTPRP 498
           PP+AAS ++ PC+ ST+  P
Sbjct: 607 PPAAASTISLPCQPSTSKEP 626


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,887,458
Number of Sequences: 27780
Number of extensions: 351459
Number of successful extensions: 825
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)