Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1009
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.    288   3e-80
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   1.2  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   6.4  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score =  288 bits (707), Expect = 3e-80
 Identities = 122/165 (73%), Positives = 139/165 (84%)
 Frame = +3

Query: 60  ARGKPXYPWXDAIMIQLREEGWIHHLSRHAVACFLTRGDLWISWEEGMKVFDELLLDADW 239
           A G+  +PW DAIM QLREEGWIHHL+RHAVACFLTRGDLWISWEEGMKVFDELLLDADW
Sbjct: 348 ANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFDELLLDADW 407

Query: 240 SVNAGMWMWXXXXXXXXXXXHCYCPVRFGRKTDPNGDFIRKYIPALKNMPTRYIHEPWMA 419
           SVNAGMWMW           HCYCPVRFGRK DPNGD+IR+Y+P LKN PTRYIHEPW A
Sbjct: 408 SVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNA 467

Query: 420 PESVQAAAQCSIGRDYPMPMVDHTKASQINIERIKQVYAQLARYK 554
           P +VQ AA+C IG+DY +PMV+H+K+S+INIER+KQVY QL +Y+
Sbjct: 468 PLNVQRAAKCIIGKDYSLPMVNHSKSSRINIERMKQVYQQLNKYR 512


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 314 RAVTVEKLLEKRRAGEPHPHACVHRPVC 231
           RA+ V   + K +   PHPH  V +  C
Sbjct: 95  RALVVVSCVTKDQPYRPHPHNLVGKEAC 122


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 314 RAVTVEKLLEKRRAGEPHPHACVHRPVC 231
           RA+ V   + K +   PHPH  V +  C
Sbjct: 95  RALVVVSCVTKDQPYRPHPHNLVGKEAC 122


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/50 (24%), Positives = 20/50 (40%)
 Frame = -1

Query: 280 DEQENHIHMPAFTDQSASRSNSSNTFIPSSHEIQRSPLVKKQATACRDKW 131
           D   N+++     +   +  + SNT   +SHE       +  AT C   W
Sbjct: 156 DLVHNYMNFMQMDEFVVNLKSGSNTIERNSHESXFVVPTRVPATCCTTXW 205


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,662
Number of Sequences: 438
Number of extensions: 4199
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)