Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1009
(700 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g15620.1 68416.m01981 6-4 photolyase (UVR3) identical to 6-4 ... 200 5e-52
At4g08920.1 68417.m01469 cryptochrome 1 apoprotein (CRY1) / flav... 105 4e-23
At1g04400.2 68414.m00431 cryptochrome 2 apoprotein (CRY2) / blue... 93 1e-19
At1g04400.1 68414.m00430 cryptochrome 2 apoprotein (CRY2) / blue... 93 1e-19
At5g24850.1 68418.m02938 cryptochrome dash (CRYD) nearly identic... 56 3e-08
At4g01210.1 68417.m00159 glycosyltransferase family protein 1 co... 29 3.0
At4g15080.1 68417.m02317 zinc finger (DHHC type) family protein ... 28 5.2
At2g11520.1 68415.m01242 protein kinase family protein contains ... 28 5.2
At5g24030.1 68418.m02823 C4-dicarboxylate transporter/malic acid... 28 6.8
At3g43760.1 68416.m04675 hypothetical protein 28 6.8
At1g66780.1 68414.m07591 MATE efflux family protein contains TIG... 28 6.8
At1g10820.2 68414.m01243 expressed protein similar to hypothetic... 27 9.0
At1g10820.1 68414.m01242 expressed protein similar to hypothetic... 27 9.0
>At3g15620.1 68416.m01981 6-4 photolyase (UVR3) identical to 6-4
photolyase (UVR3) GB:AB003687 [Arabidopsis thaliana]
(Nucleic Acids Res. 26 (2), 638-644 (1998))
Length = 556
Score = 200 bits (489), Expect = 5e-52
Identities = 83/157 (52%), Positives = 109/157 (69%)
Frame = +3
Query: 66 GKPXYPWXDAIMIQLREEGWIHHLSRHAVACFLTRGDLWISWEEGMKVFDELLLDADWSV 245
GK YPW DAIM+QL + GW+HHL+RH VACFLTRGDL+I WE+G VF+ LL+D+DW++
Sbjct: 361 GKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAI 420
Query: 246 NAGMWMWXXXXXXXXXXXHCYCPVRFGRKTDPNGDFIRKYIPALKNMPTRYIHEPWMAPE 425
N G WMW Y P+ FG+K DP+G +IR ++P LK+MP +YI+EPW AP
Sbjct: 421 NNGNWMWLSCSSFFYQFNRIYSPISFGKKYDPDGKYIRHFLPVLKDMPKQYIYEPWTAPL 480
Query: 426 SVQAAAQCSIGRDYPMPMVDHTKASQINIERIKQVYA 536
SVQ A C +G+DYP PMV H AS+ ++ + YA
Sbjct: 481 SVQTKANCIVGKDYPKPMVLHDSASKECKRKMGEAYA 517
>At4g08920.1 68417.m01469 cryptochrome 1 apoprotein (CRY1) /
flavin-type blue-light photoreceptor (HY4) contains Pfam
PF03441: FAD binding domain of DNA photolyase; member of
Pfam PF00875: deoxyribodipyrimidine photolyase
superfamily; 99% identical to Cryptochrome 1 apoprotein
(Blue light photoreceptor) (flavin-type blue-light
photoreceptor) (SP:Q43125) [Arabidopsis thaliana]
Length = 681
Score = 105 bits (251), Expect = 4e-23
Identities = 57/158 (36%), Positives = 84/158 (53%), Gaps = 1/158 (0%)
Frame = +3
Query: 63 RGKPXYPWXDAIMIQLREEGWIHHLSRHAVACFLTRGDLWISWEEGMKVFDELLLDADWS 242
+G+ YP DA M +L GW+H R V+ F + L + W GMK F + LLDAD
Sbjct: 336 QGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV-LQLPWRWGMKYFWDTLLDADLE 394
Query: 243 VNAGMWMWXXXXXXXXXXXHCYCPVRF-GRKTDPNGDFIRKYIPALKNMPTRYIHEPWMA 419
+A W + +F G K DPNG+++R+++P L +PT +IH PW A
Sbjct: 395 SDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNA 454
Query: 420 PESVQAAAQCSIGRDYPMPMVDHTKASQINIERIKQVY 533
PESV AA +G +YP+P+V +A E + Q++
Sbjct: 455 PESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMW 492
>At1g04400.2 68414.m00431 cryptochrome 2 apoprotein (CRY2) / blue
light photoreceptor (PHH1) 97% identical to photolysase
(PHH1) (SP:Q96524) and cryptochrome 2 apoprotein (CRY2)
(SP:U43397). ESTs gb|W43661 and gb|Z25638 come from this
gene; contains Pfam profiles PF03441: FAD binding domain
of DNA photolyase and PF00875: deoxyribodipyrimidine
photolyase; identical to cDNA Cvi cryptochrome 2 (CRY2)
GI:18026275
Length = 612
Score = 93.5 bits (222), Expect = 1e-19
Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 1/156 (0%)
Frame = +3
Query: 63 RGKPXYPWXDAIMIQLREEGWIHHLSRHAVACFLTRGDLWISWEEGMKVFDELLLDADWS 242
+G+ YP DA M +L GW+H+ R V+ F + L + W+ GMK F + LLDAD
Sbjct: 333 QGRTGYPLVDAGMRELWATGWMHNRIRVIVSSFAVKF-LLLPWKWGMKYFWDTLLDADLE 391
Query: 243 VNAGMWMWXXXXXXXXXXX-HCYCPVRFGRKTDPNGDFIRKYIPALKNMPTRYIHEPWMA 419
+ W + P G K DP G++IR+++P L +PT +IH PW A
Sbjct: 392 CDILGWQYISGSIPDGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDA 451
Query: 420 PESVQAAAQCSIGRDYPMPMVDHTKASQINIERIKQ 527
P +V A+ +G +Y P+VD A ++ + I +
Sbjct: 452 PLTVLKASGVELGTNYAKPIVDIDTARELLAKAISR 487
>At1g04400.1 68414.m00430 cryptochrome 2 apoprotein (CRY2) / blue
light photoreceptor (PHH1) 97% identical to photolysase
(PHH1) (SP:Q96524) and cryptochrome 2 apoprotein (CRY2)
(SP:U43397). ESTs gb|W43661 and gb|Z25638 come from this
gene; contains Pfam profiles PF03441: FAD binding domain
of DNA photolyase and PF00875: deoxyribodipyrimidine
photolyase; identical to cDNA Cvi cryptochrome 2 (CRY2)
GI:18026275
Length = 612
Score = 93.5 bits (222), Expect = 1e-19
Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 1/156 (0%)
Frame = +3
Query: 63 RGKPXYPWXDAIMIQLREEGWIHHLSRHAVACFLTRGDLWISWEEGMKVFDELLLDADWS 242
+G+ YP DA M +L GW+H+ R V+ F + L + W+ GMK F + LLDAD
Sbjct: 333 QGRTGYPLVDAGMRELWATGWMHNRIRVIVSSFAVKF-LLLPWKWGMKYFWDTLLDADLE 391
Query: 243 VNAGMWMWXXXXXXXXXXX-HCYCPVRFGRKTDPNGDFIRKYIPALKNMPTRYIHEPWMA 419
+ W + P G K DP G++IR+++P L +PT +IH PW A
Sbjct: 392 CDILGWQYISGSIPDGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDA 451
Query: 420 PESVQAAAQCSIGRDYPMPMVDHTKASQINIERIKQ 527
P +V A+ +G +Y P+VD A ++ + I +
Sbjct: 452 PLTVLKASGVELGTNYAKPIVDIDTARELLAKAISR 487
>At5g24850.1 68418.m02938 cryptochrome dash (CRYD) nearly identical
to cryptochrome dash [Arabidopsis thaliana] GI:28971609;
similar to Deoxyribodipyrimidine photolyase (DNA
photolyase) (Photoreactivating
enzyme)(SP:Q55081){Synechocystis sp.}
Length = 526
Score = 55.6 bits (128), Expect = 3e-08
Identities = 31/114 (27%), Positives = 50/114 (43%)
Frame = +3
Query: 69 KPXYPWXDAIMIQLREEGWIHHLSRHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVN 248
K YP DA M +L G++ + R V FL R D+ + W G + F+ LLD D N
Sbjct: 371 KTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVR-DMGLDWRMGAEWFETCLLDYDPCSN 429
Query: 249 AGMWMWXXXXXXXXXXXHCYCPVRFGRKTDPNGDFIRKYIPALKNMPTRYIHEP 410
G W + + + + DP G+++ ++ L+ +P H P
Sbjct: 430 YGNWTYGAGVGNDPREDRYFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWP 483
>At4g01210.1 68417.m00159 glycosyltransferase family protein 1
contains Pfam profile: PF00534 Glycosyl transferases
group 1
Length = 981
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +3
Query: 168 RGDLWISWEE--GMKVFDE-LLLDADWSVNAGMWMW 266
RG +W+ W + +K DE L +AD G W+W
Sbjct: 874 RGKMWVKWFDYTTLKTMDEDLAEEADSDRRVGHWLW 909
>At4g15080.1 68417.m02317 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 718
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 283 NDEQENHIHMPAFTDQSASRSNSSNTFIPSSH 188
+ E +I +PA T + +R +S N IPSSH
Sbjct: 588 DQEAGRYISVPATTSEPRTRFSSQNQPIPSSH 619
>At2g11520.1 68415.m01242 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 510
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 418 PRSLCRRPPSAASDVTTPCRWSTTPRPRR 504
P+S R PPS + +P R++ +PRP R
Sbjct: 179 PQSPFRAPPSPSRVPQSPSRYAMSPRPSR 207
>At5g24030.1 68418.m02823 C4-dicarboxylate transporter/malic acid
transport family protein weak similarity to SP|P25396
Tellurite resistance protein tehA. {Escherichia coli};
contains Pfam profile PF03595: C4-dicarboxylate
transporter/malic acid transport protein
Length = 635
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 325 PKRTGQ*QWKNCWKNDEQENHIHMPAFTDQSASRSN 218
PK+ Q +W + +N EN + FTD +S+SN
Sbjct: 585 PKQNSQHRWLDQLRNVSSENIENYLKFTDSDSSQSN 620
>At3g43760.1 68416.m04675 hypothetical protein
Length = 280
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +3
Query: 162 LTRGD-LWISWEEGMKVFDELLLDADWSVNAGMWMW 266
L+ GD LW+ W E + E + +AG W+W
Sbjct: 43 LSHGDSLWVKWIERFLLKKEPFWTVKENTSAGSWIW 78
>At1g66780.1 68414.m07591 MATE efflux family protein contains
TIGRfam profile: TIGR00797: MATE efflux family protein,
Pfam profile PF01554: Uncharacterized membrane protein
family
Length = 485
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -1
Query: 424 SGAIHGSCM*RVGMFFRAGMYFLMKSPLGSV--FLPKRTGQ*QW 299
SG G+ +G + G Y+L+ P+GS+ F+ K G+ W
Sbjct: 399 SGVARGTGWQHIGAYANIGSYYLVGIPVGSILCFVVKLRGKGLW 442
>At1g10820.2 68414.m01243 expressed protein similar to hypothetical
protein GB:AAB71979
Length = 258
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +1
Query: 439 PPSAASDVTTPCRWSTTPRPRR*ISNGS-NRSTHNSPDISLKL 564
P DV CRW T R +R +N + N ST D S +L
Sbjct: 90 PDKTVRDVALRCRWMTRKRRKREDNNAAKNISTRKVVDTSPEL 132
>At1g10820.1 68414.m01242 expressed protein similar to hypothetical
protein GB:AAB71979
Length = 232
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +1
Query: 439 PPSAASDVTTPCRWSTTPRPRR*ISNGS-NRSTHNSPDISLKL 564
P DV CRW T R +R +N + N ST D S +L
Sbjct: 64 PDKTVRDVALRCRWMTRKRRKREDNNAAKNISTRKVVDTSPEL 106
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,135,221
Number of Sequences: 28952
Number of extensions: 328767
Number of successful extensions: 705
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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