Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1008
         (500 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0E3M4 Cluster: Chromosome undetermined scaffold_77, wh...    33   2.7  
UniRef50_Q6LF60 Cluster: Putative uncharacterized protein; n=1; ...    32   8.3  

>UniRef50_A0E3M4 Cluster: Chromosome undetermined scaffold_77, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_77,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1741

 Score = 33.5 bits (73), Expect = 2.7
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = -1

Query: 278 QNTTHLFVYYVTHRLYLIKIIVTLHHL 198
           QN  HLF++YV +++ L+K I +LH +
Sbjct: 903 QNVQHLFIFYVKYKIRLMKTINSLHRI 929


>UniRef50_Q6LF60 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 871

 Score = 31.9 bits (69), Expect = 8.3
 Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = -1

Query: 317 INNNLCAINDKNAQNTTHLFVYYV--THRLYLIKIIVTLHHLYAGKILMF*VFFFIYLFN 144
           INN++C   + +++   HL +YY+    +   +K++   ++       +F +F+ I   N
Sbjct: 134 INNHICNYINSSSKYFIHLCIYYIYNNEKSKFLKLLQNFNNYCFSYEDLFILFYLICRIN 193

Query: 143 TRS*RIKIYLLH 108
            +  +I  Y+LH
Sbjct: 194 YKDTQIIHYMLH 205


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 352,514,863
Number of Sequences: 1657284
Number of extensions: 6019955
Number of successful extensions: 10743
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10736
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29691847201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)