Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1005
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    28   1.3  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   2.3  
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    26   5.4  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    26   7.2  
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    25   9.5  
SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces pomb...    25   9.5  

>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 498 FDLIHFKYN*RGPILYHITFNI 563
           FD +HF YN   PIL   +FNI
Sbjct: 445 FDNVHFSYNPNRPILNGCSFNI 466


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 19   FYILIAKFQSGYLLANPWLFYSL 87
            ++ + A+  S Y+L+ PWLFY++
Sbjct: 2033 WWFMFARLPSYYVLSIPWLFYAV 2055


>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 230 YWKLA*RGGKEWSKFLIKTPVFYLPKLF*YFSTLYTRLQFSYLQHL 367
           YW +    G     FL+ +PV   P L+    T+ T  QF+ +Q L
Sbjct: 172 YWVMCMVIGIPLLIFLLISPVLQTPALWEIVETMITLFQFAQIQAL 217


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 288 GVFIRNLLHSFPPRYANFQYPVPQFLILNSFTII 187
           G+F  +LL +   +  NF+   P + +LNSF ++
Sbjct: 15  GIFPVSLLSTQARQLLNFKLKSPSYYLLNSFKLL 48


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +2

Query: 92  MLQRKGKTLFT*L--NVGQNWCYKETC*TSVRCSMIVNEFRIKN 217
           ML +K K L   L  N  +   Y ET  T +    ++NE+R+ N
Sbjct: 191 MLDKKNKYLLRMLVYNAHKQKFYNETLPTLLNHMQVLNEYRVSN 234


>SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 116

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 649 QVKLGVVISPKHTKILHEKNP 711
           Q+ L  ++ P HTK LH + P
Sbjct: 90  QLSLRTILPPAHTKNLHRQQP 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,248,299
Number of Sequences: 5004
Number of extensions: 70355
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)